Files in darksideoftheshmoo/rcell2
CellID Data Analysis Inside the Tidyverse
.Rbuildignore
.github/.gitignore
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/cimage.R
R/hu_moments_short.R
R/imports.R
R/k-means_clustering.R
R/load_cell_data.R
R/load_mask_data.R
R/magrittr_compatibility.R
R/qc_filter.R
R/rcell2.R
R/read_tiff_tags.R
R/utils.R
R/workflow_template.R
README.md
codecov.yml
doc/TFP.out.png
doc/TFP.png
doc/preview_tile.png
doc/preview_trace.png
inst/cellid_arguments.txt
inst/imagej_macros/FFT_filter_on_BFs_R.txt
inst/imagej_macros/open.ijm
inst/output_descriptions2.txt
inst/parameters.txt
inst/parameters_description.tsv
inst/parameters_description.txt
inst/parameters_test.txt
inst/rmarkdown/templates/rmd_template.dev/skeleton/skeleton.Rmd
inst/rmarkdown/templates/rmd_template.dev/template.yaml
inst/workflow_template.Rmd
man/append_hues.Rd
man/append_hues2.Rd
man/calculate_extra_morpho_vars.Rd
man/calculate_ntot.Rd
man/cell.load.boundaries.Rd
man/check_tiff_mask.Rd
man/cimage.Rd
man/cimage.cell.data.Rd
man/cimage.cell.image.Rd
man/d.Rd
man/dot-format.sequence.Rd
man/dot-mk_flag_table.Rd
man/dot-parse_load_vars.Rd
man/get_cell_image.Rd
man/get_cell_image.cell.data.Rd
man/get_cell_image.data.frame.Rd
man/get_fit_vars.Rd
man/get_stage_xy_from_file.Rd
man/get_tiff_description.Rd
man/get_tiff_time_from_file.Rd
man/get_workflow_template.Rd
man/hu.moments.Rd
man/hues_from_tsv2.Rd
man/hues_from_tsv_files2.Rd
man/hues_from_xy.Rd
man/hues_from_xy2.Rd
man/is.cell.data.Rd
man/kmeans_clustering.Rd
man/load_cell_data.Rd
man/load_cell_data_checkid.Rd
man/load_tiff_masks.Rd
man/load_tsv_masks.Rd
man/mask_df_from_tiff.Rd
man/qc_execute.Rd
man/qc_filter.Rd
man/qc_reset.Rd
man/qc_undo.Rd
man/rcell2.Rd
man/read_coords_tsv.Rd
man/read_description.Rd
man/read_tiff_masks.Rd
man/read_tiff_tags.Rd
man/standardise_data.Rd
man/standardize_data.Rd
man/tsv_paths_from_args.Rd
man/tsv_paths_from_dir.Rd
man/update_ntot.Rd
man/write.delim.Rd
rcell2.Rproj
tests/testthat.R
tests/testthat/_snaps/load_cell_data/clean_cdata.csv
tests/testthat/mock_data/sample_time_series/BF_Position12_time10.tif
tests/testthat/mock_data/sample_time_series/BF_Position12_time10.tif.out.tif
tests/testthat/mock_data/sample_time_series/BF_Position12_time20.tif
tests/testthat/mock_data/sample_time_series/BF_Position12_time20.tif.out.tif
tests/testthat/mock_data/sample_time_series/BF_Position12_time30.tif
tests/testthat/mock_data/sample_time_series/BF_Position12_time30.tif.out.tif
tests/testthat/mock_data/sample_time_series/BF_Position4_time10.tif
tests/testthat/mock_data/sample_time_series/BF_Position4_time10.tif.out.tif
tests/testthat/mock_data/sample_time_series/BF_Position4_time20.tif
tests/testthat/mock_data/sample_time_series/BF_Position4_time20.tif.out.tif
tests/testthat/mock_data/sample_time_series/BF_Position4_time30.tif
tests/testthat/mock_data/sample_time_series/BF_Position4_time30.tif.out.tif
tests/testthat/mock_data/sample_time_series/Position12/bf_rcell2-526725eddf2f5.txt
tests/testthat/mock_data/sample_time_series/Position12/cellid_cmd-52672441a5f91.txt
tests/testthat/mock_data/sample_time_series/Position12/cellid_error-5267276609f8.txt
tests/testthat/mock_data/sample_time_series/Position12/cellid_log-5267221cbd036.txt
tests/testthat/mock_data/sample_time_series/Position12/fl_rcell2-52672615dd46c.txt
tests/testthat/mock_data/sample_time_series/Position12/out_all
tests/testthat/mock_data/sample_time_series/Position12/out_all_masks.tsv.gz
tests/testthat/mock_data/sample_time_series/Position12/out_bf_fl_mapping
tests/testthat/mock_data/sample_time_series/Position12/parameters_516166a9dc3eb.txt
tests/testthat/mock_data/sample_time_series/Position4/bf_rcell2-5266533546d23.txt
tests/testthat/mock_data/sample_time_series/Position4/cellid_cmd-52665538837a9.txt
tests/testthat/mock_data/sample_time_series/Position4/cellid_error-5266534b1a398.txt
tests/testthat/mock_data/sample_time_series/Position4/cellid_log-526654eb02ddf.txt
tests/testthat/mock_data/sample_time_series/Position4/fl_rcell2-526652ba11816.txt
tests/testthat/mock_data/sample_time_series/Position4/out_all
tests/testthat/mock_data/sample_time_series/Position4/out_all_masks.tsv.gz
tests/testthat/mock_data/sample_time_series/Position4/out_bf_fl_mapping
tests/testthat/mock_data/sample_time_series/Position4/parameters_516166a9dc3eb.txt
tests/testthat/mock_data/sample_time_series/TFP_Position12_time10.tif
tests/testthat/mock_data/sample_time_series/TFP_Position12_time10.tif.out.tif
tests/testthat/mock_data/sample_time_series/TFP_Position12_time20.tif
tests/testthat/mock_data/sample_time_series/TFP_Position12_time20.tif.out.tif
tests/testthat/mock_data/sample_time_series/TFP_Position12_time30.tif
tests/testthat/mock_data/sample_time_series/TFP_Position12_time30.tif.out.tif
tests/testthat/mock_data/sample_time_series/TFP_Position4_time10.tif
tests/testthat/mock_data/sample_time_series/TFP_Position4_time10.tif.out.tif
tests/testthat/mock_data/sample_time_series/TFP_Position4_time20.tif
tests/testthat/mock_data/sample_time_series/TFP_Position4_time20.tif.out.tif
tests/testthat/mock_data/sample_time_series/TFP_Position4_time30.tif
tests/testthat/mock_data/sample_time_series/TFP_Position4_time30.tif.out.tif
tests/testthat/mock_data/sample_time_series/YFP_Position12_time10.tif
tests/testthat/mock_data/sample_time_series/YFP_Position12_time10.tif.out.tif
tests/testthat/mock_data/sample_time_series/YFP_Position12_time20.tif
tests/testthat/mock_data/sample_time_series/YFP_Position12_time20.tif.out.tif
tests/testthat/mock_data/sample_time_series/YFP_Position12_time30.tif
tests/testthat/mock_data/sample_time_series/YFP_Position12_time30.tif.out.tif
tests/testthat/mock_data/sample_time_series/YFP_Position4_time10.tif
tests/testthat/mock_data/sample_time_series/YFP_Position4_time10.tif.out.tif
tests/testthat/mock_data/sample_time_series/YFP_Position4_time20.tif
tests/testthat/mock_data/sample_time_series/YFP_Position4_time20.tif.out.tif
tests/testthat/mock_data/sample_time_series/YFP_Position4_time30.tif
tests/testthat/mock_data/sample_time_series/YFP_Position4_time30.tif.out.tif
tests/testthat/test-load_cell_data.R
