cimage.cell.image: cimage.cell.image

In darksideoftheshmoo/rcell2: CellID Data Analysis Inside the Tidyverse

cimage.cell.image

Description

returns cropped cell images arranged in some way

Usage

## S3 method for class 'cell.image'
cimage(
  X,
  formula = NULL,
  subset = NULL,
  facets = NULL,
  scales = "fixed",
  allow.expressions = FALSE,
  nx = NULL,
  ny = NULL,
  facets.nx = NULL,
  facets.ny = NULL,
  bg.col = "white",
  border = 1,
  facets.border = 1,
  rev.y = TRUE,
  font.size = 14,
  font.col = "black",
  display = interactive(),
  ...
)

Arguments

X	cell.data or cell.image object to plot
formula	formula of the form 'var1+var2~var3' specifying how the images are to be ordered. See details.
subset	logical expression indicating elements or rows to keep. Don't specify channel here
facets	formula of the form 'var1+var2~var3' specifying how to facet the plot. See details.
scales	either 'none', 'fixed' or 'free' axis for each facet
allow.expressions	allow expressions in formulas, set to TRUE when called from cimage.cell.data
nx	number of columns of images within each facet. Used with formula '~var1' or 'var1~.'
ny	number of rows of images within each facet. Used with formulas '~var1' or 'var1~.'
facets.nx	number of columns of facets. Used with facets '~var1' or 'var1~.'
facets.ny	number of rows of facets. Used with facets '~var1' or 'var1~.'
bg.col	The background color of the plot
border	the width in pixels of the border between images
facets.border	the width in pixels of the border between facets
rev.y	boolean indicating if the y axis should be reversed
font.size	The size of the font to use, in pixels
font.col	The color of the font to use
display	boolean indicating if the created image should be displayed
...	further arguments for methods. cimage calls get_cell_image, so all the arguments of this function are available.

darksideoftheshmoo/rcell2 documentation built on Oct. 23, 2024, 12:59 p.m.