Man pages for darksideoftheshmoo/rcell2
CellID Data Analysis Inside the Tidyverse
| append_hues | Add Hu moments from TIFF files to cell.data |
| append_hues2 | Generate Hu moments from CellID's mask TSV files |
| calculate_extra_morpho_vars | calculate_extra_morpho_vars |
| calculate_ntot | calculate number of time frames a cell appears in |
| cell.load.boundaries | Load CellID boundary data to a dataframe |
| check_tiff_mask | Check X/Y positions of cells and cells's masks |
| cimage | cimage |
| cimage.cell.data | cimage.cell.data |
| cimage.cell.image | cimage.cell.image |
| d | d |
| dot-format.sequence | Format sequence of numbers |
| dot-mk_flag_table | Make Flag Table |
| dot-parse_load_vars | Parse Names of Variables to Load |
| get_cell_image | Retrieves the images from single cells in an cell.data or... |
| get_cell_image.cell.data | get_cell_image |
| get_cell_image.data.frame | get_cell_image.data.frame |
| get_fit_vars | get_fit_vars |
| get_stage_xy_from_file | Get stage XY coordinates from tiff file's description tag |
| get_tiff_description | Get Metamorph image XML description |
| get_tiff_time_from_file | Get tiff acquisition times from tiff file's description tag |
| get_workflow_template | A function to donwload the latest worflow tempalte in... |
| hues_from_tsv2 | Generate Hu moments from XY coordinates TSV file |
| hues_from_tsv_files2 | Generate Hu moments data frame from one or more TSV files |
| hues_from_xy | Generate Hu moments from XY coordinates dataframe |
| hues_from_xy2 | Generate Hu moments from XY coordinates in parallel |
| hu.moments | Hu moments |
| is.cell.data | is cell data |
| kmeans_clustering | K-means clustering |
| load_cell_data | Load cellID data |
| load_cell_data_checkid | Check UCID-T.FRAME unicity |
| load_tiff_masks | Load cell masks from BF.out TIFF files |
| load_tsv_masks | Generate a data.frame with XY mask data from CellID's TSV... |
| mask_df_from_tiff | Read cell masks from BF.out |
| qc_execute | qc_execute |
| qc_filter | qc_filter |
| qc_reset | qc_reset |
| qc_undo | qc_undo |
| rcell2 | Yeast Cell Cytometry Suite for CellID in R. |
| read_coords_tsv | Read TSV file with CellID mask coordinates |
| read_description | Extract additional info from a 'TIFFTAG_DESCRIPTION'. |
| read_tiff_masks | Read cell masks from BF.out |
| read_tiff_tags | Read TIFF tag information. |
| standardise_data | standardise_data |
| standardize_data | standardize_data |
| tsv_paths_from_args | Generate data.frame with paths to coordinate TSV files |
| tsv_paths_from_dir | Generate data.frame with paths to coordinate TSV files |
| update_ntot | Update number of frames a cell appears in |
| write.delim | write tab delimited file |
