darunabas/phyloregion: Biogeographic Regionalization and Macroecology
Computational infrastructure for biogeography, community ecology, and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>. It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>. The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013> on patterns and processes of biogeographical regionalization. Additionally, the package contains fast and efficient functions to compute more standard conservation measures such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness and global endangerment, as well as compositional turnover (e.g., beta diversity).
Getting started
Browse package contents
Package details |
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| Author | Barnabas H. Daru [aut, cre, cph] (<https://orcid.org/0000-0002-2115-0257>), Piyal Karunarathne [aut] (<https://orcid.org/0000-0002-1934-145X>), Klaus Schliep [aut] (<https://orcid.org/0000-0003-2941-0161>), Xiaobei Zhao [ctb], Albin Sandelin [ctb], Luciano Pataro [ctb] |
| Bioconductor views | Software |
| Maintainer | Barnabas H. Daru <darunabas@gmail.com> |
| License | AGPL-3 |
| Version | 1.0.9 |
| URL | https://github.com/darunabas/phyloregion https://phyloregion.com/index.html http://phyloregion.com/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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