Files in darunabas/phyloregion

Biogeographic Regionalization and Macroecology

.Rbuildignore

.github/.gitignore

.github/workflows/check-standard.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

CNAME

DESCRIPTION

NAMESPACE

NEWS.md R/Choropleth.R R/EDGE.R R/PD_ses.R R/WeightedEndemism.R R/arc_labels.R R/background.R R/clustering.algorithm.R R/coldspots.R R/collapse_range.R R/community.R R/convert_input_data.R R/counts.R R/evol_distinct.R R/fishnet.R R/fitgom.R R/functional_beta.R R/get_clades.R R/hexcols_rescale.R R/indicator_species.R R/map_traits.R R/mean_matrix.R R/nodepie.R R/optimal_bioregion.R R/pd.R R/phylo_beta.R R/phylo_builder.R R/phylo_endemism.R R/phylobeta_ses.R R/phyloregion-package.R R/phyloregion.R R/plot_pie.R R/random_species.R R/rast_quantile.R R/sample2sparsematrix.R R/sdm.R R/see_sparse.R R/selectbylocation.R R/time_slice.R R/treeSampler.R R/utils.R R/visualize_phyloregions.R README.md

_pkgdown.yml

build/vignette.rds

data/africa.RData

docs/404.html

docs/CNAME

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docs/articles/.DS_Store

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docs/articles/index.html

docs/articles/phyloregion-intro.html

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docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/EDGE.html

docs/reference/PD.html

docs/reference/PD_ses.html

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docs/reference/coldspots.html

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docs/reference/counts.html

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docs/reference/evol_distinct.html

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docs/reference/match_phylo_comm.html

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docs/reference/random_species.html

docs/reference/rast2comm.html

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docs/reference/read.community.html

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docs/reference/weighted_endemism.html

docs/sitemap.xml

inst/CITATION

inst/NGAplants/Chytranthus_gilletii.tif

inst/NGAplants/Commelina_ramulosa.tif

inst/NGAplants/Cymbopogon_caesius.tif

inst/NGAplants/Dalechampia_ipomoeifolia.tif

inst/NGAplants/Grewia_barombiensis.tif

inst/NGAplants/Indigofera_berhautiana.tif

inst/NGAplants/Indigofera_erecta.tif

inst/NGAplants/Indigofera_oubanguiensis.tif

inst/ex/Bombax.csv

inst/ex/IHfeb20.csv

inst/ex/SR_Naija.json

inst/ex/nigeria.json

inst/ex/sa.json

inst/phyloregion_sticker.png

inst/tinytest/test_phyloregion.R man/EDGE.Rd man/PD.Rd man/PD_ses.Rd man/africa.Rd man/arc_labels.Rd man/backg.Rd man/beta_diss.Rd man/choropleth.Rd man/coldspots.Rd man/collapse_range.Rd man/counts.Rd man/dirpath.Rd man/evol_distinct.Rd

man/figures/examples.png

man/figures/logo.png

man/fishnet.Rd man/fitgom.Rd man/functional_beta.Rd man/get_clades.Rd man/hexcols.Rd man/indicators.Rd man/long2sparse.Rd man/map_trait.Rd man/match_phylo_comm.Rd man/mean_dist.Rd man/nodepie.Rd man/optimal_phyloregion.Rd man/phylo_endemism.Rd man/phylobeta.Rd man/phylobeta_ses.Rd man/phylobuilder.Rd man/phyloregion-package.Rd man/phyloregion.Rd man/plot.phyloregion.Rd man/plot.sparse.Rd man/plot_pie.Rd man/random_species.Rd man/rast2comm.Rd man/rast_quantile.Rd man/read.community.Rd man/reexports.Rd man/sdm.Rd man/select_linkage.Rd man/selectbylocation.Rd man/timeslice.Rd man/tree_sampler.Rd man/unifrac.Rd man/weighted_endemism.Rd

phyloregion.Rproj

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pkgdown/favicon/favicon.ico

tests/tinytest.R vignettes/Benchmark.Rmd

vignettes/Rbuildignore.txt

vignettes/benchmark-beta_diversity-1.png

vignettes/benchmark-phylo_diversity-1.png

vignettes/benchmark-phylo_endemism-1.png

vignettes/benchmark-phylobeta-1.png

vignettes/ed-evoldistinct-1.png

vignettes/ed.Rmd

vignettes/gitignore.txt

vignettes/homogenization.Rmd.orig

vignettes/phyloregion-intro.Rmd

vignettes/phyloregion.bib

vignettes/precompile.R

vignettes/workflow.png

darunabas/phyloregion documentation built on Feb. 3, 2024, 8:59 p.m.