Files in darunabas/phyloregion
Biogeographic Regionalization and Macroecology
.Rbuildignore
.github/.gitignore
.github/workflows/check-standard.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
CNAME
DESCRIPTION
NAMESPACE
NEWS.md
R/Choropleth.R
R/EDGE.R
R/PD_ses.R
R/WeightedEndemism.R
R/arc_labels.R
R/background.R
R/clustering.algorithm.R
R/coldspots.R
R/collapse_range.R
R/community.R
R/convert_input_data.R
R/counts.R
R/evol_distinct.R
R/fishnet.R
R/fitgom.R
R/functional_beta.R
R/get_clades.R
R/hexcols_rescale.R
R/indicator_species.R
R/map_traits.R
R/mean_matrix.R
R/nodepie.R
R/optimal_bioregion.R
R/pd.R
R/phylo_beta.R
R/phylo_builder.R
R/phylo_endemism.R
R/phylobeta_ses.R
R/phyloregion-package.R
R/phyloregion.R
R/plot_pie.R
R/random_species.R
R/rast_quantile.R
R/sample2sparsematrix.R
R/sdm.R
R/see_sparse.R
R/selectbylocation.R
R/time_slice.R
R/treeSampler.R
R/utils.R
R/visualize_phyloregions.R
README.md
_pkgdown.yml
build/vignette.rds
data/africa.RData
docs/404.html
docs/CNAME
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/.DS_Store
docs/articles/Benchmark.html
docs/articles/Benchmark_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/benchmark-beta_diversity-1.png
docs/articles/benchmark-phylo_diversity-1.png
docs/articles/benchmark-phylo_endemism-1.png
docs/articles/benchmark-phylobeta-1.png
docs/articles/ed-evoldistinct-1.png
docs/articles/ed.html
docs/articles/ed_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/index.html
docs/articles/phyloregion-intro.html
docs/articles/phyloregion-intro_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/phyloregion-intro_files/figure-html/unnamed-chunk-10-1.png
docs/articles/phyloregion-intro_files/figure-html/unnamed-chunk-11-1.png
docs/articles/phyloregion-intro_files/figure-html/unnamed-chunk-14-1.png
docs/articles/phyloregion-intro_files/figure-html/unnamed-chunk-14-2.png
docs/articles/phyloregion-intro_files/figure-html/unnamed-chunk-2-1.png
docs/articles/phyloregion-intro_files/figure-html/unnamed-chunk-6-1.png
docs/articles/phyloregion-intro_files/figure-html/unnamed-chunk-8-1.png
docs/articles/phyloregion-intro_files/figure-html/unnamed-chunk-9-1.png
docs/articles/workflow.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/EDGE.html
docs/reference/PD.html
docs/reference/PD_ses.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/africa-1.png
docs/reference/africa.html
docs/reference/arc_labels-1.png
docs/reference/arc_labels.html
docs/reference/backg.html
docs/reference/beta_diss.html
docs/reference/choropleth.html
docs/reference/coldspots-1.png
docs/reference/coldspots.html
docs/reference/collapse_range.html
docs/reference/counts.html
docs/reference/dirpath.html
docs/reference/evol_distinct.html
docs/reference/figures/examples.png
docs/reference/figures/logo.png
docs/reference/fishnet.html
docs/reference/fitgom-1.png
docs/reference/fitgom.html
docs/reference/functional_beta-1.png
docs/reference/functional_beta.html
docs/reference/get_clades-1.png
docs/reference/get_clades.html
docs/reference/hexcols-1.png
docs/reference/hexcols.html
docs/reference/index.html
docs/reference/indicators.html
docs/reference/long2sparse.html
docs/reference/map_trait-1.png
docs/reference/map_trait.html
docs/reference/match_phylo_comm.html
docs/reference/mean_dist.html
docs/reference/nodepie.html
docs/reference/optimal_phyloregion-1.png
docs/reference/optimal_phyloregion.html
docs/reference/phylo_endemism-1.png
docs/reference/phylo_endemism.html
docs/reference/phylobeta.html
docs/reference/phylobeta_ses.html
docs/reference/phylobuilder-1.png
docs/reference/phylobuilder-2.png
docs/reference/phylobuilder-3.png
docs/reference/phylobuilder.html
docs/reference/phyloregion-package.html
docs/reference/phyloregion.html
docs/reference/plot.phyloregion-1.png
docs/reference/plot.phyloregion-2.png
docs/reference/plot.phyloregion.html
docs/reference/plot.sparse.html
docs/reference/plot_pie-1.png
docs/reference/plot_pie.html
docs/reference/random_species.html
docs/reference/rast2comm.html
docs/reference/rast_quantile.html
docs/reference/read.community.html
docs/reference/reexports.html
docs/reference/sdm.html
docs/reference/select_linkage-1.png
docs/reference/select_linkage.html
docs/reference/selectbylocation-1.png
docs/reference/selectbylocation.html
docs/reference/timeslice-1.png
docs/reference/timeslice.html
docs/reference/tree_sampler.html
docs/reference/unifrac.html
docs/reference/weighted_endemism-1.png
docs/reference/weighted_endemism.html
docs/sitemap.xml
inst/CITATION
inst/NGAplants/Chytranthus_gilletii.tif
inst/NGAplants/Commelina_ramulosa.tif
inst/NGAplants/Cymbopogon_caesius.tif
inst/NGAplants/Dalechampia_ipomoeifolia.tif
inst/NGAplants/Grewia_barombiensis.tif
inst/NGAplants/Indigofera_berhautiana.tif
inst/NGAplants/Indigofera_erecta.tif
inst/NGAplants/Indigofera_oubanguiensis.tif
inst/ex/Bombax.csv
inst/ex/IHfeb20.csv
inst/ex/SR_Naija.json
inst/ex/nigeria.json
inst/ex/sa.json
inst/phyloregion_sticker.png
inst/tinytest/test_phyloregion.R
man/EDGE.Rd
man/PD.Rd
man/PD_ses.Rd
man/africa.Rd
man/arc_labels.Rd
man/backg.Rd
man/beta_diss.Rd
man/choropleth.Rd
man/coldspots.Rd
man/collapse_range.Rd
man/counts.Rd
man/dirpath.Rd
man/evol_distinct.Rd
man/figures/examples.png
man/figures/logo.png
man/fishnet.Rd
man/fitgom.Rd
man/functional_beta.Rd
man/get_clades.Rd
man/hexcols.Rd
man/indicators.Rd
man/long2sparse.Rd
man/map_trait.Rd
man/match_phylo_comm.Rd
man/mean_dist.Rd
man/nodepie.Rd
man/optimal_phyloregion.Rd
man/phylo_endemism.Rd
man/phylobeta.Rd
man/phylobeta_ses.Rd
man/phylobuilder.Rd
man/phyloregion-package.Rd
man/phyloregion.Rd
man/plot.phyloregion.Rd
man/plot.sparse.Rd
man/plot_pie.Rd
man/random_species.Rd
man/rast2comm.Rd
man/rast_quantile.Rd
man/read.community.Rd
man/reexports.Rd
man/sdm.Rd
man/select_linkage.Rd
man/selectbylocation.Rd
man/timeslice.Rd
man/tree_sampler.Rd
man/unifrac.Rd
man/weighted_endemism.Rd
phyloregion.Rproj
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/tinytest.R
vignettes/Benchmark.Rmd
vignettes/Rbuildignore.txt
vignettes/benchmark-beta_diversity-1.png
vignettes/benchmark-phylo_diversity-1.png
vignettes/benchmark-phylo_endemism-1.png
vignettes/benchmark-phylobeta-1.png
vignettes/ed-evoldistinct-1.png
vignettes/ed.Rmd
vignettes/gitignore.txt
vignettes/homogenization.Rmd.orig
vignettes/phyloregion-intro.Rmd
vignettes/phyloregion.bib
vignettes/precompile.R
vignettes/workflow.png
