| africa | Plants of southern Africa |
| arc_labels | Add arc labels to plotted phylogeny |
| backg | Sample background points |
| beta_diss | Taxonomic (non-phylogenetic) beta diversity |
| choropleth | Bin values |
| coldspots | Computes biodiversity coldspots and hotspots |
| collapse_range | Collapse nodes and ranges based on divergence times |
| counts | Phyloregions for functional traits and phylogeny |
| dirpath | Get current directory |
| EDGE | Evolutionary Distinctiveness and Global Endangerment |
| evol_distinct | Species' evolutionary distinctiveness |
| fishnet | Create fishnet of regular grids |
| fitgom | Fits Grade of membership models for biogeographic... |
| functional_beta | Functional beta diversity for mixed-type functional traits |
| get_clades | Get descendant nodes of phylogeny at a given time depth |
| hexcols | Generate diverging colors in HCL colour space. |
| indicators | Top driving species in phyloregions |
| long2sparse | Conversion of community data |
| map_trait | Map species' trait values in geographic space |
| match_phylo_comm | Match taxa and in phylogeny and community matrix |
| mean_dist | Mean distance matrix from a set of distance matrices |
| nodepie | Label phylogenetic nodes using pie |
| optimal_phyloregion | Determine optimal number of clusters |
| PD | Phylogenetic diversity |
| PD_ses | Phylogenetic diversity standardized for species richness |
| phylobeta | Phylogenetic beta diversity |
| phylobeta_ses | Phylogenetic beta diversity standardized for species beta... |
| phylobuilder | Create a subtree with largest overlap from a species list. |
| phylo_endemism | Phylogenetic Endemism |
| phyloregion | Compute phylogenetic regionalization and evolutionary... |
| phyloregion-package | Biogeographic regionalization and macroecology |
| plot.phyloregion | Visualize biogeographic patterns |
| plot_pie | Visualize biogeographic patterns using pie charts |
| plot.sparse | Create illustrative sparse matrix |
| random_species | Generate random species distributions in space |
| rast2comm | Convert raw input distribution data to community |
| rast_quantile | Standardizes raster values for mapping |
| read.community | Read in sparse community matrices |
| reexports | Objects exported from other packages |
| sdm | Fast species distribution model |
| selectbylocation | Select polygon features from another layer and adds polygon... |
| select_linkage | Cluster algorithm selection and validation |
| timeslice | Slice phylogenetic tree at various time depths |
| tree_sampler | Subset trees from posterior distribution of trees. |
| unifrac | UniFrac distance |
| weighted_endemism | Measure the distribution of narrow-ranged or endemic species. |
