Man pages for databio/MIRA
Methylation-Based Inference of Regulatory Activity

addMethPropColAdd column for proportion of methylation
aggregateMethylAggregate methylation data to get a summary methylation...
bigBinDT1DNA methylation data for the "Applying MIRA to a Biological...
bigBinDT2DNA methylation data for the "Applying MIRA to a Biological...
binRegionDivide region into similarly sized bins.
BSBinAggregateBins regions and aggregates methylation data across the...
BSreadBiSeqRead in files from biseq meth caller
bsseqToDataTableConvert a BSseq object to data.table format for MIRA.
calcMIRAScoreScore methylation profile based on its shape
exampleAnnoDT1A data.table with annotation for a bisulfite sample.
exampleAnnoDT2Annotation data for the "Applying MIRA to a Biological...
exampleBinsA data.table with artificial binned methylation data
exampleBSDTA data.table containing DNA methylation data.
exampleBSseqObjA small BSseq object.
exampleRegionSetA Granges object with Nrf1-binding regions.
MIRAMethylation-based Inference of Regulatory Activity (MIRA)
plotMIRAProfilesPlot summary methylation profile
plotMIRAScoresPlot MIRA scores and compare different conditions
rbindNamedListCombine data.tables from a named list into one big data.table...
SummarizedExperimentToDataTableMake MIRA-compatible data.tables using information from...
databio/MIRA documentation built on Oct. 28, 2018, 10:44 p.m.