davemcg/ChromatinCompare: Compare and analyze chromatin segmentation (ChromHMM, Segway, etc.) differences
Version 0.0.0.9000

ChromatinCompare takes, as input, bed files of chromatin segmentation from programs like ChromHMM (http://compbio.mit.edu/ChromHMM/) and Segway (http://segway.hoffmanlab.org) and provides tools to quickly visualize and compare differences between segmentation files at user-selectable level (e.g. gene body, exons only, promoter regions). ChromDiff (http://compbio.mit.edu/ChromDiff/) provides similar functionality, but requires a large set of carefully formatted inputs and only works at the gene level.

Getting started

Package details

Maintainer
License**Public Domain Notice** Parts of this software are a United States Government Work. Anyone may use the software on a worldwide and royalty-free basis for any purpose and anyone may reproduce and prepare derivative works without restriction. Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software, the National Eye Institute (NEI), National Institutes of Health (NIH) and the U.S. Government do not and cannot warrant the performance or any results that may be obtained by using this software. NEI, NIH and the U.S. Government disclaim all warranties as to performance, merchantability or fitness for any particular purpose. No indemnification is intended or provided by the US government. In any work produced using or in any product derived from this material, the authors would appreciate being acknowledged per scientific custom as the source of the software. **Copyrighted Works** ChromatinCompare uses copyrighted work and distributes these works under the terms of their respective licenses. All copyright restrictions still apply to these 'third-party' packages.
Version0.0.0.9000
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("davemcg/ChromatinCompare")
davemcg/ChromatinCompare documentation built on Sept. 21, 2017, 12:34 a.m.