Files in davemcg/eyeIntegration_app
eyeIntegration Shiny App Code
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/data_compressor.R
R/extract_data_for_download.R
R/get_eyeIntegration_data.R
R/run_eyeIntegration.R
R/sample_count_2017_2019.R
R/sample_count_2022.R
README.md
inst/2019_eyeIntegration_Overview_drawIO.xml
inst/2023_eyeIntegration_Overview_drawIO.02.xml
inst/2023_eyeIntegration_Overview_drawIO.xml
inst/analyses/Processing_Your_RNAseq_Data_Guide.Rmd
inst/analyses/Processing_Your_RNAseq_Data_Guide.freeze02.html
inst/analyses/cornea_GRC_example.Rmd
inst/analyses/cornea_GRC_example.nb.html
inst/analyses/organoid.Rmd
inst/analyses/query_custom_gene_list.Rmd
inst/analyses/query_custom_gene_list.freeze01.html
inst/analyses/rpe_zip.R
inst/analyses/using_EiaD_counts_with_your_RNAseq.Rmd
inst/analyses/viewing_stats.Rmd
inst/analyses/viewing_stats.freeze_2022_01.html
inst/analyses/viewing_stats.freeze_2023_04.html
inst/analyses/visitor_stats_2021_12.Rdata
inst/analyses/visitor_stats_2023_04.Rdata
inst/app/metamoRph_core.R
inst/app/server.R
inst/app/ui.R
inst/app/www/2017_workflow.svg
inst/app/www/2019_workflow.svg
inst/app/www/2023_eyeIntegration_Overview_drawIO.drawio.02.svg
inst/app/www/2023_eyeIntegration_Overview_drawIO.drawio.svg
inst/app/www/NEI_logo_mine.svg
inst/app/www/NEI_logo_mine2.svg
inst/app/www/all_tsne_plot_prepped__2017_02.Rdata
inst/app/www/analyses.html
inst/app/www/analyses.md
inst/app/www/basic_stats.Rdata
inst/app/www/bulk_tsne.png
inst/app/www/datatable.png
inst/app/www/ei_pca_visualization.png
inst/app/www/eye.png
inst/app/www/footer.html
inst/app/www/guides/DESeq2_eyeIntegration_Guide.freeze01.html
inst/app/www/network_1_screenshot.png
inst/app/www/network_2_screenshot.png
inst/app/www/pantissueFC_screenshot.png
inst/app/www/pantissue_boxplot_2023.png
inst/app/www/pantissue_boxplot_pre_2023.png
inst/app/www/pantissue_heatmap.png
inst/app/www/pantissue_heatmap_2023.png
inst/app/www/pantissue_heatmap_pre_2023.png
inst/app/www/pantissue_screenshot.png
inst/app/www/sample_count_2017_2019.svg
inst/app/www/sample_count_2022.svg
inst/app/www/sc_2d.png
inst/app/www/sc_heatmap_bottom.png
inst/app/www/sc_heatmap_overlay.png
inst/app/www/sc_heatmap_top.png
inst/app/www/simplified_workflow.svg
inst/app/www/singlecell_boxplot_2023.png
inst/app/www/theme_Publication.R
inst/app/www/tissue_val.Rdata
inst/app/www/ucsc_tracks.html
inst/app/www/ucsc_tracks.md
inst/app/www/ucsc_tracks_screenshot.png
inst/app/www/user_faceted_pca_visualization.png
inst/app/www/user_overlayed_pca_visualization.png
inst/app/www/view.png
inst/citations.md
inst/datasets.md
ip_info.Rdata
man/data_compressor.Rd
man/extract_data_for_download.Rd
man/get_eyeIntegration_datasets.Rd
man/run_eyeIntegration.Rd
