eyeIntegration_app: eyeIntegration Shiny App Code

Study Accession | Title | Tissue | DOI --- | --- | --- | ---- E_MTAB_4377 | An atlas of gene expression and gene co-regulation in the human retina | Retina | http://dx.doi.org/10.1093/nar/gkw486 SRP002881 | SplicePL: de novo splice junction detection from paired-end RNA-seq reads | Retina | http://dx.doi.org/ SRP011895 | Comparison of stem-cell derived retinal pigment epithelia (RPE) with human fetal retina pigment epithelium | RPE | http://dx.doi.org/10.5966/sctm.2012-0134 SRP012585 | Identification of miRNA signatures during the differentiation of hESCs into retinal pigment epithelial cells | ESC, RPE | http://dx.doi.org/10.1371/journal.pone.0037224 SRP012682 | Genotype-Tissue Expression (GTEx) Common Fund Project | Adipose Tissue, Adrenal Gland, Blood, Blood Vessel, Brain, Breast, Colon, Esophagus, Heart, Kidney, Liver, Lung, Muscle, Nerve, Pancreas, Pituitary, Salivary Gland, Skin, Small Intestine, Spleen, Stomach, Thyroid | http://dx.doi.org/10.1038/nature24277 SRP015336 | Unprecedented alternative splicing and 3 Mb of novel transcribed sequence leads to significant transcript diversity in the transcriptome of the human retina | Retina | http://dx.doi.org/10.1186/1471-2164-14-486 SRP016140 | Identification of Novel Molecular Markers through Transcriptomic Analysis in Human Fetal and Adult Corneal Endothelial Cells | Cornea | http://dx.doi.org/10.1093/hmg/dds527 SRP034875 | Comprehensive Analysis of Gene Expression in Human Retina and Supporting Tissues | Retina, RPE | http://dx.doi.org/10.1093/hmg/ddu114 SRP035641 | RNA-seq analysis in Cornea epithelial cells (CECs), skin epithelial cells (SECs), LSCs after knocking down PAX6 (3-D shPAX6 LSCs) and SESCs transduced with PAX6(3-D PAX6+ SESCs) upon 3-D differentiation | Cornea | http://dx.doi.org/10.1038/nature13465 SRP045639 | Aneuploidy-induced cellular stresses limit autophagic degradation. | RPE | http://dx.doi.org/10.1101/gad.269118.115 SRP053034 | Homo sapiens Transcriptome or Gene expression | RPE | http://dx.doi.org/10.1038/nature14512 SRP055101 | Transcriptomic analysis of cultured corneal endothelial cells as a validation for their use in cell-replacement therapy | Cornea | http://dx.doi.org/10.3727/096368915X688948 SRP056957 | Transcriptome dynamics of developing photoreceptors in 3-D retina cultures recapitulates temporal sequence of human cone and rod differentiation revealing cell surface markers and gene networks | ESC, Retina | http://dx.doi.org/10.1002/stem.2122 SRP057295 | Reversal of persistent wound-induced retinal pigmented epithelial-to-mesenchymal transition by the TGFb pathway inhibitor, A-83-01. | RPE | http://dx.doi.org/10.1186/s13073-015-0183-x SRP061670 | Homo sapiens Raw sequence reads | RPE | - SRP062870 | Deletion of DXZ4 on the human inactive X chromosome eliminates superdomains and impairs gene silencing | RPE | http://dx.doi.org/10.1073/pnas.1609643113 SRP064956 | Mammalian cell-lines Transcriptome or Gene expression | RPE | http://dx.doi.org/10.1038/ncb3201 SRP079002 | Enriched retinal ganglion cells derived from human embryonic stem cells (RNA-seq) | ESC | http://dx.doi.org/10.1038/srep30552 SRP080002 | RNA-Seq of retinal tissue from a Human Eye | Retina | http://dx.doi.org/10.1093/hmg/ddw268 SRP080886 | Region-specific Transcriptome Analysis of the Human Retina and RPE/Choroid | Retina, RPE | http://dx.doi.org/10.1016/j.exer.2014.11.001 SRP091605 | Transcriptomes during lens differentiation of human embryonic stem cells | ESC, Lens | - SRP050054 | Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets | Single Cell Mouse Retina | http://dx.doi.org/10.1016/j.cell.2015.05.002