Files in davharris/rosalia
Exact inference for small binary Markov networks

.Rbuildignore
.gitignore
DESCRIPTION
Harris_2015/.DS_Store
Harris_2015/Pairs-results.txt
Harris_2015/boot.R
Harris_2015/cache/__packages
Harris_2015/cache/unnamed-chunk-1_eb80fe059c0c97ce3d223094b94a81e2.RData
Harris_2015/cache/unnamed-chunk-1_eb80fe059c0c97ce3d223094b94a81e2.rdb
Harris_2015/cache/unnamed-chunk-1_eb80fe059c0c97ce3d223094b94a81e2.rdx
Harris_2015/cache/unnamed-chunk-2_182223df0ed106f1a62cdce0f4cccd84.RData
Harris_2015/cache/unnamed-chunk-2_182223df0ed106f1a62cdce0f4cccd84.rdb
Harris_2015/cache/unnamed-chunk-2_182223df0ed106f1a62cdce0f4cccd84.rdx
Harris_2015/cache/unnamed-chunk-3_744de11a62e8cd2fff367674d291a476.RData
Harris_2015/cache/unnamed-chunk-3_744de11a62e8cd2fff367674d291a476.rdb
Harris_2015/cache/unnamed-chunk-3_744de11a62e8cd2fff367674d291a476.rdx
Harris_2015/dynamic_simulation.Rmd
Harris_2015/estimates.csv
Harris_2015/fakedata/.DS_Store
Harris_2015/fakedata/matrices/.DS_Store
Harris_2015/fakedata/matrices/1600-abund1-transposed.txt
Harris_2015/fakedata/matrices/1600-abund1.csv
Harris_2015/fakedata/matrices/1600-abund10-transposed.txt
Harris_2015/fakedata/matrices/1600-abund10.csv
Harris_2015/fakedata/matrices/1600-abund11-transposed.txt
Harris_2015/fakedata/matrices/1600-abund11.csv
Harris_2015/fakedata/matrices/1600-abund12-transposed.txt
Harris_2015/fakedata/matrices/1600-abund12.csv
Harris_2015/fakedata/matrices/1600-abund13-transposed.txt
Harris_2015/fakedata/matrices/1600-abund13.csv
Harris_2015/fakedata/matrices/1600-abund14-transposed.txt
Harris_2015/fakedata/matrices/1600-abund14.csv
Harris_2015/fakedata/matrices/1600-abund15-transposed.txt
Harris_2015/fakedata/matrices/1600-abund15.csv
Harris_2015/fakedata/matrices/1600-abund16-transposed.txt
Harris_2015/fakedata/matrices/1600-abund16.csv
Harris_2015/fakedata/matrices/1600-abund17-transposed.txt
Harris_2015/fakedata/matrices/1600-abund17.csv
Harris_2015/fakedata/matrices/1600-abund18-transposed.txt
Harris_2015/fakedata/matrices/1600-abund18.csv
Harris_2015/fakedata/matrices/1600-abund19-transposed.txt
Harris_2015/fakedata/matrices/1600-abund19.csv
Harris_2015/fakedata/matrices/1600-abund2-transposed.txt
Harris_2015/fakedata/matrices/1600-abund2.csv
Harris_2015/fakedata/matrices/1600-abund20-transposed.txt
Harris_2015/fakedata/matrices/1600-abund20.csv
Harris_2015/fakedata/matrices/1600-abund21-transposed.txt
Harris_2015/fakedata/matrices/1600-abund21.csv
Harris_2015/fakedata/matrices/1600-abund22-transposed.txt
Harris_2015/fakedata/matrices/1600-abund22.csv
Harris_2015/fakedata/matrices/1600-abund23-transposed.txt
Harris_2015/fakedata/matrices/1600-abund23.csv
Harris_2015/fakedata/matrices/1600-abund24-transposed.txt
Harris_2015/fakedata/matrices/1600-abund24.csv
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Harris_2015/fakedata/matrices/1600-abund25.csv
Harris_2015/fakedata/matrices/1600-abund26-transposed.txt
Harris_2015/fakedata/matrices/1600-abund26.csv
Harris_2015/fakedata/matrices/1600-abund27-transposed.txt
Harris_2015/fakedata/matrices/1600-abund27.csv
Harris_2015/fakedata/matrices/1600-abund28-transposed.txt
Harris_2015/fakedata/matrices/1600-abund28.csv
Harris_2015/fakedata/matrices/1600-abund29-transposed.txt
Harris_2015/fakedata/matrices/1600-abund29.csv
Harris_2015/fakedata/matrices/1600-abund3-transposed.txt
Harris_2015/fakedata/matrices/1600-abund3.csv
Harris_2015/fakedata/matrices/1600-abund30-transposed.txt
Harris_2015/fakedata/matrices/1600-abund30.csv
Harris_2015/fakedata/matrices/1600-abund31-transposed.txt
Harris_2015/fakedata/matrices/1600-abund31.csv
Harris_2015/fakedata/matrices/1600-abund32-transposed.txt
Harris_2015/fakedata/matrices/1600-abund32.csv
Harris_2015/fakedata/matrices/1600-abund33-transposed.txt
Harris_2015/fakedata/matrices/1600-abund33.csv
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Harris_2015/fakedata/matrices/1600-abund36.csv
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Harris_2015/fakedata/matrices/1600-abund37.csv
Harris_2015/fakedata/matrices/1600-abund38-transposed.txt
Harris_2015/fakedata/matrices/1600-abund38.csv
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Harris_2015/fakedata/matrices/1600-abund39.csv
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Harris_2015/fakedata/matrices/1600-abund4.csv
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Harris_2015/fakedata/matrices/1600-abund7-transposed.txt
Harris_2015/fakedata/matrices/1600-abund7.csv
Harris_2015/fakedata/matrices/1600-abund8-transposed.txt
Harris_2015/fakedata/matrices/1600-abund8.csv
Harris_2015/fakedata/matrices/1600-abund9-transposed.txt
Harris_2015/fakedata/matrices/1600-abund9.csv
Harris_2015/fakedata/matrices/1600-env1-transposed.txt
Harris_2015/fakedata/matrices/1600-env1.csv
Harris_2015/fakedata/matrices/1600-env10-transposed.txt
Harris_2015/fakedata/matrices/1600-env10.csv
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Harris_2015/fakedata/matrices/1600-env13.csv
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Harris_2015/fakedata/matrices/1600-env14.csv
Harris_2015/fakedata/matrices/1600-env15-transposed.txt
Harris_2015/fakedata/matrices/1600-env15.csv
Harris_2015/fakedata/matrices/1600-env16-transposed.txt
Harris_2015/fakedata/matrices/1600-env16.csv
Harris_2015/fakedata/matrices/1600-env17-transposed.txt
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Harris_2015/fakedata/matrices/1600-env18-transposed.txt
Harris_2015/fakedata/matrices/1600-env18.csv
Harris_2015/fakedata/matrices/1600-env19-transposed.txt
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Harris_2015/fakedata/matrices/1600-env2-transposed.txt
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Harris_2015/fakedata/matrices/1600-env3-transposed.txt
Harris_2015/fakedata/matrices/1600-env3.csv
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Harris_2015/fakedata/matrices/1600-env8-transposed.txt
Harris_2015/fakedata/matrices/1600-env8.csv
Harris_2015/fakedata/matrices/1600-env9-transposed.txt
Harris_2015/fakedata/matrices/1600-env9.csv
Harris_2015/fakedata/matrices/1600-no_env1-transposed.txt
Harris_2015/fakedata/matrices/1600-no_env1.csv
Harris_2015/fakedata/matrices/1600-no_env10-transposed.txt
Harris_2015/fakedata/matrices/1600-no_env10.csv
Harris_2015/fakedata/matrices/1600-no_env11-transposed.txt
Harris_2015/fakedata/matrices/1600-no_env11.csv
Harris_2015/fakedata/matrices/1600-no_env12-transposed.txt
Harris_2015/fakedata/matrices/1600-no_env12.csv
Harris_2015/fakedata/matrices/1600-no_env13-transposed.txt
Harris_2015/fakedata/matrices/1600-no_env13.csv
Harris_2015/fakedata/matrices/1600-no_env14-transposed.txt
Harris_2015/fakedata/matrices/1600-no_env14.csv
Harris_2015/fakedata/matrices/1600-no_env15-transposed.txt
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Harris_2015/fakedata/matrices/1600-no_env19-transposed.txt
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Harris_2015/fakedata/matrices/1600-no_env2-transposed.txt
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Harris_2015/graph_data.Rdata
Harris_2015/manuscript-materials/.DS_Store
Harris_2015/manuscript-materials/Appendices.Rmd
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Harris_2015/manuscript-materials/H.txt
Harris_2015/manuscript-materials/My Library.bib
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Harris_2015/manuscript-materials/figures/Figure_2.key
Harris_2015/manuscript-materials/figures/Figure_2.pdf Harris_2015/manuscript-materials/figures/correlation.pdf Harris_2015/manuscript-materials/figures/error_rates.pdf Harris_2015/manuscript-materials/figures/performance.pdf
Harris_2015/manuscript-materials/mytemplate.latex
Harris_2015/manuscript-materials/pdf.sh
Harris_2015/manuscript-materials/response-to-editor.md Harris_2015/manuscript-materials/response-to-editor.pdf Harris_2015/manuscript-materials/response-to-reviewers.md Harris_2015/manuscript-materials/response-to-reviewers.pdf Harris_2015/models.Rmd
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Harris_2015/recovery.R Harris_2015/recovery.Rmd Harris_2015/recovery.pdf
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Harris_2015/recovery_files/figure-latex/unnamed-chunk-8-1.pdf Harris_2015/recovery_files/figure-latex/unnamed-chunk-8-2.pdf Harris_2015/results.pdf
Harris_2015/rosalia.job
Harris_2015/show-results.Rmd
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Harris_2015/show-results.pdf
Harris_2015/show-results.tex
Harris_2015/simulation.Rmd
Harris_2015/simulation.html
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Harris_2015/summarized_results.csv
Harris_2015/talk_figure.pdf Harris_2015/three_species.Rmd
Harris_2015/three_species.html
Harris_2015/three_species.pdf
LICENSE
NAMESPACE
NEWS
R/exact.R R/simulate_data.R R/stochastic.R README.md estimates.pdf
inst/CITATION
inst/tests/tests.R man/make_flat_prior.Rd man/make_logistic_prior.Rd man/rosalia.Rd
stochastic/My Library.bib
stochastic/chapter-3.Rmd
stochastic/chapter-3.html
stochastic/chapter-3.pdf
stochastic/chapter-3.tex
stochastic/convergence.pdf stochastic/dynamic_simulation.R
stochastic/ecology.csl
stochastic/estimates.pdf
stochastic/figure-1.key
stochastic/figure-1.pdf
stochastic/mytemplate.latex
stochastic/poster-alpha.pdf stochastic/poster-beta.pdf stochastic/stochastic-recovery.Rmd stochastic/stochastic-recovery.pdf
stochastic/stochastic-recovery_files/figure-html/unnamed-chunk-3-1.png
stochastic/stochastic-recovery_files/figure-latex/unnamed-chunk-2-1.pdf stochastic/stochastic-recovery_files/figure-latex/unnamed-chunk-3-1.pdf
stochastic/stochastic.job
davharris/rosalia documentation built on May 12, 2017, 7:42 p.m.