Files in davharris/rosalia

Exact inference for small binary Markov networks

.Rbuildignore

.gitignore

DESCRIPTION

Harris_2015/.DS_Store

Harris_2015/Pairs-results.txt

Harris_2015/boot.R

Harris_2015/cache/__packages

Harris_2015/cache/unnamed-chunk-1_eb80fe059c0c97ce3d223094b94a81e2.RData

Harris_2015/cache/unnamed-chunk-1_eb80fe059c0c97ce3d223094b94a81e2.rdb

Harris_2015/cache/unnamed-chunk-1_eb80fe059c0c97ce3d223094b94a81e2.rdx

Harris_2015/cache/unnamed-chunk-2_182223df0ed106f1a62cdce0f4cccd84.RData

Harris_2015/cache/unnamed-chunk-2_182223df0ed106f1a62cdce0f4cccd84.rdb

Harris_2015/cache/unnamed-chunk-2_182223df0ed106f1a62cdce0f4cccd84.rdx

Harris_2015/cache/unnamed-chunk-3_744de11a62e8cd2fff367674d291a476.RData

Harris_2015/cache/unnamed-chunk-3_744de11a62e8cd2fff367674d291a476.rdb

Harris_2015/cache/unnamed-chunk-3_744de11a62e8cd2fff367674d291a476.rdx

Harris_2015/dynamic_simulation.Rmd

Harris_2015/estimates.csv

Harris_2015/fakedata/.DS_Store

Harris_2015/fakedata/matrices/.DS_Store

Harris_2015/fakedata/matrices/1600-abund1-transposed.txt

Harris_2015/fakedata/matrices/1600-abund1.csv

Harris_2015/fakedata/matrices/1600-abund10-transposed.txt

Harris_2015/fakedata/matrices/1600-abund10.csv

Harris_2015/fakedata/matrices/1600-abund11-transposed.txt

Harris_2015/fakedata/matrices/1600-abund11.csv

Harris_2015/fakedata/matrices/1600-abund12-transposed.txt

Harris_2015/fakedata/matrices/1600-abund12.csv

Harris_2015/fakedata/matrices/1600-abund13-transposed.txt

Harris_2015/fakedata/matrices/1600-abund13.csv

Harris_2015/fakedata/matrices/1600-abund14-transposed.txt

Harris_2015/fakedata/matrices/1600-abund14.csv

Harris_2015/fakedata/matrices/1600-abund15-transposed.txt

Harris_2015/fakedata/matrices/1600-abund15.csv

Harris_2015/fakedata/matrices/1600-abund16-transposed.txt

Harris_2015/fakedata/matrices/1600-abund16.csv

Harris_2015/fakedata/matrices/1600-abund17-transposed.txt

Harris_2015/fakedata/matrices/1600-abund17.csv

Harris_2015/fakedata/matrices/1600-abund18-transposed.txt

Harris_2015/fakedata/matrices/1600-abund18.csv

Harris_2015/fakedata/matrices/1600-abund19-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund2-transposed.txt

Harris_2015/fakedata/matrices/1600-abund2.csv

Harris_2015/fakedata/matrices/1600-abund20-transposed.txt

Harris_2015/fakedata/matrices/1600-abund20.csv

Harris_2015/fakedata/matrices/1600-abund21-transposed.txt

Harris_2015/fakedata/matrices/1600-abund21.csv

Harris_2015/fakedata/matrices/1600-abund22-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund25.csv

Harris_2015/fakedata/matrices/1600-abund26-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund27-transposed.txt

Harris_2015/fakedata/matrices/1600-abund27.csv

Harris_2015/fakedata/matrices/1600-abund28-transposed.txt

Harris_2015/fakedata/matrices/1600-abund28.csv

Harris_2015/fakedata/matrices/1600-abund29-transposed.txt

Harris_2015/fakedata/matrices/1600-abund29.csv

Harris_2015/fakedata/matrices/1600-abund3-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund30-transposed.txt

Harris_2015/fakedata/matrices/1600-abund30.csv

Harris_2015/fakedata/matrices/1600-abund31-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund32-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund33-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund36.csv

Harris_2015/fakedata/matrices/1600-abund37-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund38-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund4.csv

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Harris_2015/fakedata/matrices/1600-abund7-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund8-transposed.txt

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Harris_2015/fakedata/matrices/1600-abund9-transposed.txt

Harris_2015/fakedata/matrices/1600-abund9.csv

Harris_2015/fakedata/matrices/1600-env1-transposed.txt

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Harris_2015/fakedata/matrices/1600-env15-transposed.txt

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Harris_2015/fakedata/matrices/1600-env16-transposed.txt

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Harris_2015/fakedata/matrices/1600-env30-transposed.txt

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Harris_2015/fakedata/matrices/1600-no_env13-transposed.txt

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Harris_2015/fakedata/matrices/1600-no_env14-transposed.txt

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Harris_2015/fakedata/matrices/1600-no_env15-transposed.txt

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Harris_2015/fakedata/matrices/1600-no_env2-transposed.txt

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Harris_2015/fakedata/matrices/1600-no_env20-transposed.txt

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Harris_2015/fakedata/matrices/200-abund1-transposed.txt

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Harris_2015/graph_data.Rdata

Harris_2015/manuscript-materials/.DS_Store

Harris_2015/manuscript-materials/Appendices.Rmd

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Harris_2015/manuscript-materials/H.txt

Harris_2015/manuscript-materials/My Library.bib

Harris_2015/manuscript-materials/cover letter.pdf Harris_2015/manuscript-materials/draft-esa.pdf Harris_2015/manuscript-materials/draft.Rmd Harris_2015/manuscript-materials/draft.pdf

Harris_2015/manuscript-materials/draft.tex

Harris_2015/manuscript-materials/ecology.csl

Harris_2015/manuscript-materials/fakedata_list.txt

Harris_2015/manuscript-materials/figures/Figure_1.key

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Harris_2015/manuscript-materials/figures/Figure_2.key

Harris_2015/manuscript-materials/figures/Figure_2.pdf Harris_2015/manuscript-materials/figures/correlation.pdf Harris_2015/manuscript-materials/figures/error_rates.pdf Harris_2015/manuscript-materials/figures/performance.pdf

Harris_2015/manuscript-materials/mytemplate.latex

Harris_2015/manuscript-materials/pdf.sh

Harris_2015/manuscript-materials/response-to-editor.md Harris_2015/manuscript-materials/response-to-editor.pdf Harris_2015/manuscript-materials/response-to-reviewers.md Harris_2015/manuscript-materials/response-to-reviewers.pdf Harris_2015/models.Rmd

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Harris_2015/recovery.R Harris_2015/recovery.Rmd Harris_2015/recovery.pdf

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Harris_2015/recovery_files/figure-latex/unnamed-chunk-8-1.pdf Harris_2015/recovery_files/figure-latex/unnamed-chunk-8-2.pdf Harris_2015/results.pdf

Harris_2015/rosalia.job

Harris_2015/show-results.Rmd

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Harris_2015/show-results.tex

Harris_2015/simulation.Rmd

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Harris_2015/simulation.pdf

Harris_2015/summarized_results.csv

Harris_2015/talk_figure.pdf Harris_2015/three_species.Rmd

Harris_2015/three_species.html

Harris_2015/three_species.pdf

LICENSE

NAMESPACE

NEWS

R/exact.R R/simulate_data.R R/stochastic.R README.md estimates.pdf

inst/CITATION

inst/tests/tests.R man/make_flat_prior.Rd man/make_logistic_prior.Rd man/rosalia.Rd

stochastic/My Library.bib

stochastic/chapter-3.Rmd

stochastic/chapter-3.html

stochastic/chapter-3.pdf

stochastic/chapter-3.tex

stochastic/convergence.pdf stochastic/dynamic_simulation.R

stochastic/ecology.csl

stochastic/estimates.pdf

stochastic/figure-1.key

stochastic/figure-1.pdf

stochastic/mytemplate.latex

stochastic/poster-alpha.pdf stochastic/poster-beta.pdf stochastic/stochastic-recovery.Rmd stochastic/stochastic-recovery.pdf

stochastic/stochastic-recovery_files/figure-html/unnamed-chunk-3-1.png

stochastic/stochastic-recovery_files/figure-latex/unnamed-chunk-2-1.pdf stochastic/stochastic-recovery_files/figure-latex/unnamed-chunk-3-1.pdf

stochastic/stochastic.job

davharris/rosalia documentation built on May 14, 2019, 9:29 p.m.