gi_ct_fit: Fit R0 and mean generation interval from contact tracing data

In davidchampredon/gitest: Generation intervals

Description

Fit R0 and mean generation interval from contact tracing data

Usage

gi_ct_fit(t.obs, gi.obs, model.epi, fxd.prm, R0.rng, gimean.rng, CI = 0.95,
  do.plot = FALSE)

Arguments

t.obs	Numeric vector. Time when the backward generation intervals were observed
gi.obs	Numeric vector. Backward generation intervals observed.
model.epi	String. Epidemic model used. Choice between seminr or resude.
fxd.prm	List. Parameters of model.epi that are fixed.
R0.rng	Numeric vector. Values of R0 explored to calculate the likelihood surface.
gimean.rng	Numeric vector. Values of mean intrinsic GI explored to calculate the likelihood surface.
CI	Numeric. Confidence interval level. Default = 0.95.
do.plot	Boolean. Fitting diagnostic plots. Default = TRUE.

davidchampredon/gitest documentation built on May 14, 2019, 5:13 p.m.