NEWS.md

In davidpassmore/pulse: Graph/Network Visualization

DiagrammeR (development version)

DiagrammeR 1.0.8

• Reduce minimum R version requirement.

DiagrammeR 1.0.7

• Fix malformed CSS selector in htmlwidgets/grViz.js

• Only call replace_na(replace = "") on character columns

• Added the envir argument to the grViz and replace_in_spec functions.

DiagrammeR 1.0.6.1

• Removed the set_df_as_node_attr(), set_df_as_edge_attr(), and get_attr_dfs() functions.

DiagrammeR 1.0.5

• Removes the ability to save a DiagrammeR graph object as a Gephi file (.gexf) since the rgexf package is no longer maintained

DiagrammeR 1.0.0

• Added the helper functions node_aes(), node_data(), edge_aes(), and edge_data() to facilitate the binding of node and edge aesthetic and data attribute values; several functions now have namesake arguments that accept these functions' output.

• Information about the graph is now displayed in the console when the graph object is called

• Error messages are now more helpful and try to provide pointers for the more common errors

DiagrammeR 0.9.2

• Added functions to generate 2D and 3D grid graphs (add_grid_2d() and add_grid_3d())

• Added _ws (with selection) variants of the mutate_[node/edge]_attrs() functions for mutating node or edge attributes for only those nodes/edges in an active selection

• Incorporated an edges argument into the select_edges() function in order to filter the selection of edges to a set of edge ID values

• Reduced the dependency on R to version >= 3.2.0

DiagrammeR 0.9.2

• Added functions to generate 2D and 3D grid graphs (add_grid_2d() and add_grid_3d())

• Added _ws (with selection) variants of the mutate_[node/edge]_attrs() functions for mutating node or edge attributes for only those nodes/edges in an active selection

• Incorporated an edges argument into the select_edges() function in order to filter the selection of edges to a set of edge ID values

• Reduced the dependency on R to version >= 3.2.0

DiagrammeR 0.9.1

• Simplified many functions internally

• Added a default print method for graph objects

• Allowed use of bare node or edge attribute names in many functions

• Implemented graph actions as a means to run one or more functions at every graph transformation step; for example, this can be used to automatically update a node attribute such as betweenness whenever modifications to the graph are made (e.g., adding nodes, removing edges, etc.)

• Data frames can be set as node or edge attributes with the set_df_as_node_attr() and set_df_as_edge_attr() functions; the get_attr_dfs() function allows for retrieval of stored data frame data

• Added two new graph-generating functions (add_gnp_graph(), add_pa_graph(), and create_complement_graph())

• Added functions to clone existing nodes and edges (add_n_node_clones() and add_edge_clone())

• Added several count_* functions (count_asymmetric_node_pairs(), count_automorphisms(), etc.)

• Added new functions to obtain graph properties (get_adhesion(), get_girth(), get_reciprocity(), etc.)

• Added several is_* functions for graph and edge properties (e.g., is_edge_loop(), is_graph_dag(), etc.)

• The mutate_node_attrs() and mutate_edge_attrs() functions now have simpler and more powerful interfaces for mutating node and edge attributes

• Graphs can be easily saved to disk (and read from disk) using the save_graph() and open_graph() functions

DiagrammeR 0.9.0

• Modified basic structure of node and edge data frames such that ID values are automatically set as integer values

• Just as nodes do, edges now have edge ID values (they can be obtained using get_edge_ids() and they can be used directly in the select_edges_by_edge_id() function)

• When created, a graph object automatically generates a graph ID and graph name (which can be modified using set_graph_name())

• So long as node label values are unique, they may now be used to compose edges using the add_edge() function with use_labels = TRUE

• Quickly and flexibly add color to nodes and edges using the colorize_node_attrs() and colorize_edge_attrs() functions

• Added functions to selectively modify existing node and edge attributes: copy_[node/edge]_attrs(), drop_[node/edge]_attrs(), mutate_[node/edge]_attrs(), recode_[node/edge]_attrs(), rename_[node/edge]_attrs(), and rescale_[node/edge]_attrs().

• New node and edge attributes can now be easily added to a graph via a data frame using the join_node_attrs() and join_edge_attrs() functions

• Several graph generators are available for quickly adding graph primitives to a graph object (add_balanced_tree(), add_cycle(), add_full_graph(), add_path(), add_prism(), and add_star())

• All traversal functions can now migrate numeric node or edge attribute values to the traversed edges (e.g., trav_out_edge(), trav_in_node()) by providing an attribute name to copy_attrs_from; for those traversal functions where nodes or edges may receive multiple values, one can specify an aggregation type in their agg argument (e.g,. trav_in_node(), trav_both_edge())

• Multiple conditions can be specified for all traversal types and for the select_nodes() and select_edges() functions, plus, they are much easier to write

• Added the mk_cond() helper function for creating conditions for any of the traversal functions (trav_...()), and, the select_nodes() and select_edges() functions; this helper allows for easier composition of selection/traversal conditions using variables and/or function calls

• With a selection of edges one can now use select_rev_edges_ws() to transform that selection to that of the selected edges' reverse edges (where available); the option is there to add the reverse edges to the edge selection or to simply replace the current selection

• Caching attributes for later use has been made simpler with a collection of cache_...() functions (or, set the cache explicitly using set_cache()); get the graph's cache using the get_cache() function

• Added functions to allow for layout control of nodes (set_node_position(), layout_nodes_w_string(), nudge_node_positions())

• Added functions to convert DiagrammeR graphs to igraph graphs and vice versa (to_igraph(), from_igraph())

• Now you can create a graph from an adjacency matrix (from_adj_matrix())

• Added functions to get community membership with a variety of algorithms: get_cmty_edge_btwns(), get_cmty_fast_greedy(), get_cmty_l_eigenvec(), get_cmty_louvain(), and get_cmty_walktrap().

• Added functions to determine similarity coefficient scores for graph nodes: get_dice_similarity() and get_dice_similarity().

• Constraint scores for nodes can now be determined using the get_constraint() function

• Functions for getting information on nodes neighbors have been added: get_nbrs(), get_non_nbrs(), get_similar_nbrs().

• Groups of nodes that are weakly or strongly connected components can be determined using the get_w_connected_cmpts() and get_s_connected_cmpts() functions

• Get articulation points (i.e., nodes that, when removed, disconnect the graph) with the get_articulation_points() function

• Obtain centrality measures for graph nodes using the get_closeness() and get_betweenness() functions

• Get the minimum-spanning tree subgraph from a graph with weighted edges using the get_min_spanning_tree() function

• The edge direction may be reversed for an entire graph (rev_edge_dir()) or for part of a graph using an edge selection (rev_edge_dir_ws())

• Depth-first search and breadth-first search algorithms are available in the do_dfs() and do_bfs() functions

• Degree data for plots can now be easily obtained using the get_degree_distribution() and get_degree_histogram() functions

• Global graph attributes are now more easily modifiable using a set of functions for this purpose: add_global_graph_attrs(), clear_global_graph_attrs(), delete_global_graph_attrs(), get_global_graph_attrs(), set_global_graph_attrs()

• Added option to display different text labels on nodes via the display node attribute; this is easily set with the set_node_attr_to_display() function

• Rewrote many graph functions (e.g. traversals) so that they are faster for very large graphs

• A log of all graph functions that directly modify the graph is now part of the graph object (graph$graph_log)

• Added functionality to automatically generate graph backups at every graph modification; this is in the form of RDS files deposited in a subdirectory (name is based on the graph ID) of the working directory; the option (write_backups, set to FALSE by default) is available in all functions that initialize a graph object (create_graph(), create_random_graph(), from_igraph(), from_adj_matrix())

DiagrammeR 0.8

• Revised many graph functions so they work better together

• Added many testthat tests to maintain the quality of the graph functions

• Added functions create_random_graph(), import_graph(), combine_graphs(), country_graph() and select_graph_from_series()

• Added support for visNetwork graphs as a rendering option with render_graph()

DiagrammeR 0.7

• Renamed functions graphviz_graph() and graphviz_render() to create_graph() and render_graph(), respectively

• Removed function graphviz_export() (exporting now handled with render_graph())

• Added several new functions to inspect, analyze, and modify graphs: display_graph_object(), node_info(), edge_info(), node_present(), edge_present(), get_nodes(), get_edges(), get_predecessors(), get_successors(), node_count(), edge_count(), is_graph_empty(), is_graph_directed(), add_node(), add_edges(), delete_node(), delete_edge(), node_type(), edge_relationship(), create_series(), add_to_series(), remove_from_series(), graph_count(), subset_series(), trigger_script(), render_graph_from_series(), and series_info()

DiagrammeR 0.6

• Added several functions to work with graphs: create_nodes(), create_edges(), combine_nodes(), combine_edges(), scale_nodes(), scale_edges(), get_nodes(), node_info(), graphviz_graph(), graphviz_render(), and graphviz_export()

• Removed the graphviz_nodes_edges_df() and graphviz_single_df() functions

DiagrammeR 0.5

• Added support for subgraphs and Gantt charts in mermaid diagrams

• Added function graphviz_nodes_edges_df() for generating Graphviz DOT code that defines nodes and edges (and their attributes) from data in two data frames: one for nodes, the other for the edge operations

• Added function graphviz_single_df() for generating Graphviz DOT code from a single data frame

• Incorporated the new substitution operators @_{...} or @^{...} in grViz statements for subscripting and superscripting, respectively

DiagrammeR 0.4

• Added support for substitution in Graphviz graph specifications

• Added support for Graphviz diagrams in the Shiny app

DiagrammeR 0.3

• Added support for the Graphviz neato, twopi, and circo engines

DiagrammeR 0.2

• Added the viz.js library to enable Graphviz support

DiagrammeR 0.1

• Initial release

• Incorporated into the htmlwidgets framework

• Added basic shiny app

davidpassmore/pulse documentation built on March 19, 2022, 4:39 a.m.