Crawfish: Create Raw File Information Sheet

In davidsbutcher/CRawFISh: Create summary info from a tdReport or directory of Thermo Raw files.

Description

Create Raw File Information Sheet

Usage

crawfish(
  rawFileDir = NULL,
  use_tdreport = FALSE,
  tdReportDir = NULL,
  tdReportName = NULL,
  outputDir = NULL,
  maxinjectcutoff = 0.99,
  make_report = TRUE,
  export_raw_info = FALSE
)

Arguments

rawFileDir	Full path to the directory containing relevant raw files.
use_tdreport	Boolean value. Should raw file names be retrieved from a tdReport?
tdReportDir	Full path to the directory containing the tdReport.
tdReportName	Name of the tdReport file.
maxinjectcutoff	Fraction of max injection time that should be used as cutoff for max injections.
make_report	Boolean value. Create an HTML report in the output directory?
export_raw_info	Boolean value. Export all info obtained from raw files?

Value

This function saves a table of summary data (.xlsx) and an html report for the relevant raw files to the specified output directory.

Examples

IOU some examples. -David

davidsbutcher/CRawFISh documentation built on July 7, 2021, 1:03 p.m.