This is a basic function to create R ggplot2 boxplots with square axes. The 1:1 length ratio of the y-axis and x-axis is preserved even after grouping multiple graphs using facets. Users can define the y axis range and intervals.
This packages requires ggplot2
install.packages("ggplot2")
Install using following commands:
library(devtools)
devtools::install_github("daviszhou/sbplot")
The main function is boxplot_square_axis(), which returns a plot object. Example usage:
library(sbplot)
xaxis = c('Controls', 'Study Group')
ymin = 0
ymax = 1
yinterval = 0.5
yaxis = seq(ymin, ymax, yinterval)
whiskers = c(0.10, 0.90)
p <- boxplot_square_axis(data, xaxis_category, yaxis_category, xaxis, yaxis, custom_whiskers=whiskers,
color_category=NULL,
color_scale=NULL,
color_labels=NULL,
change_fill_color=TRUE,
font_size=10)
Function Arguments:
data
: Data frame containing desired variables.
xaxis_category
: Name of data frame column that contains the factors for x-axis categories.
yaxis_category
: Name of data frame column that contains values for the y-axis.
xaxis
: Custom labels for the x-axis. Set using xaxis = c('X Group 1', 'X Group 2')
.
yaxis
: Specify the range and interval of the y-axis. Set using yaxis = seq(y_min, y_max, y_interval)
.
custom_whiskers
: Specifies custom percentiles for boxplot whiskers. Set using custom_whiskers = c(lower_whisker_percentile, upper_whisker_percentile)
. Set as "NULL" for the traditional method, which uses the farthest value within 1.5IQR from the upper and lower hinges of the boxplot. By default set to "NULL". [OPTIONAL]
color_category
: Name of the data frame column that contains the factors used to separate groups by boxplot color. To plot without subcategories sorted by color, set variable as "NULL". [OPTIONAL]
color_labels
: Vector of color category subgroup names. Set using color_labels = c("Color Group 1", "Color Group 2")
. By default will use data frame factor names. [OPTIONAL]
change_fill_color
: Determines whether to change the boxplot fill or line color if color_category is provided. By defualt set to "TRUE" to change the fill color.
* font_size
: Integer to determine text size of the title, axes, and axes labels.
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