Files in daynefiler/filer2020A
Analysis for Filer2020AA
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/calcIntStats.R
R/compareReal2Sim.R
R/estAlpha0.R
R/evalPred.R
R/fitLogNorm.R
R/plottingFunctions.R
R/procRes.R
R/runExomeDepth.R
R/subsetCounts.R
data/intAgl.RData
data/intIdt.RData
data/rlcrMask.RData
data/simRes.RData
data/subjectCorr.RData
data/subjectCounts.RData
data/subjectMeta.RData
data/wgsPoolCalls.RData
inst/slurmScripts/varDepthCounts.R
inst/slurmScripts/varDepthEdBestCalls.R
inst/slurmScripts/varDepthEdDefaultCalls.R
inst/slurmScripts/varDepthMcCalls.R
inst/snakemakeScripts/wesAnalysis/Snakefile
inst/snakemakeScripts/wesAnalysis/cluster.json
inst/snakemakeScripts/wesAnalysis/config.yaml
inst/snakemakeScripts/wesAnalysis/envs/mcCNV.yaml
inst/snakemakeScripts/wesAnalysis/scripts/callCN.R
inst/snakemakeScripts/wesAnalysis/scripts/exomeDepth.R
inst/snakemakeScripts/wesAnalysis/scripts/getCounts.R
inst/snakemakeScripts/wgsAnalysis/Snakefile
inst/snakemakeScripts/wgsAnalysis/cluster.json
inst/snakemakeScripts/wgsAnalysis/config.yaml
inst/snakemakeScripts/wgsAnalysis/envs/R.yaml
inst/snakemakeScripts/wgsAnalysis/envs/cnvpytor.yaml
inst/snakemakeScripts/wgsAnalysis/envs/erds.yaml
inst/snakemakeScripts/wgsAnalysis/getAndBuildERDS.sh
inst/snakemakeScripts/wgsAnalysis/scripts/combineCalls.R
inst/snakemakeScripts/wgsAnalysis/scripts/depthQuantile.R
man/calcIntStats.Rd
man/compareReal2Sim.Rd
man/evalPred.Rd
man/fitLogNorm.Rd
man/pltAlpha0.Rd
man/pltBestPrior.Rd
man/pltECDF.Rd
man/pltFalseCalls.Rd
man/pltMnVrCont.Rd
man/pltPriorMatrix.Rd
man/pltStat.Rd
man/pltStatCompare.Rd
man/pltSubjectStatByPool.Rd
man/procRes.Rd
man/runExomeDepth.Rd
man/subsetCounts.Rd
vignettes/bmc-mathphys.bst
vignettes/bmc_article.tex
vignettes/bmcart-biblio.sty
vignettes/bmcart.cls
vignettes/filer2020A.bib
vignettes/paper.Rnw
vignettes/paper.tex
vignettes/spbasic.bst
vignettes/supplement.Rnw
vignettes/supplement.tex
vignettes/vancouver.bst
