runExomeDepth: Run ExomeDepth on mcCNV counts object
In daynefiler/filer2020A: Analysis for Filer2020AA
Description
Usage
Arguments
Details
View source: R/runExomeDepth.R
Description
Wrapper to run the ExomeDepth algorithm on a
counts object
Usage
1
runExomeDepth(counts, transProb = 1e-04, cnvLength = 50000)
Arguments
counts
data.table counts object
transProb
passed to ExomeDepth::CallCNVs 'transition.probability'
cnvLength
passed to ExomeDepth::CallCNVs 'expected.CNV.length'
...
arguments passed to mclapply
Details
Runs ExomeDepth using the default parameters, then maps the call information
back to the counts object.
Will use parallel::mclapply() & parallel::mcmapply() to parallelize
the computation when available.
daynefiler/filer2020A documentation built on Dec. 31, 2021, 8:48 a.m.
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Description Usage Arguments Details
View source: R/runExomeDepth.R
Description
Wrapper to run the ExomeDepth algorithm on a counts object
Usage
1 | runExomeDepth(counts, transProb = 1e-04, cnvLength = 50000)
|
Arguments
counts |
data.table counts object |
transProb |
passed to ExomeDepth::CallCNVs 'transition.probability' |
cnvLength |
passed to ExomeDepth::CallCNVs 'expected.CNV.length' |
... |
arguments passed to mclapply |
Details
Runs ExomeDepth using the default parameters, then maps the call information
back to the counts object.
Will use parallel::mclapply() & parallel::mcmapply() to parallelize
the computation when available.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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