Man pages for daynefiler/filer2020A
Analysis for Filer2020AA
| calcIntStats | Calculate mean, var, size factor, phi, & shrunken phi |
| compareReal2Sim | Calculate interval statistics for real & simulated pool based... |
| evalPred | Evaluate predictions |
| fitLogNorm | Calculate log-normal fit of capture probabilities |
| pltAlpha0 | Plot alpha0 estimates by pool |
| pltBestPrior | Plot best prior across sequencing depth & variant width |
| pltECDF | Plot ECDF curves comparing two vectors |
| pltFalseCalls | Plot number of false calls by depth |
| pltMnVrCont | Plot variance by mean contours |
| pltPriorMatrix | Plot prior by depth performance matrix |
| pltStat | Plot procRes results |
| pltStatCompare | Plot summary statistics comparing two fits |
| pltSubjectStatByPool | Plot subject stat by pool |
| procRes | Process call summaries |
| runExomeDepth | Run ExomeDepth on mcCNV counts object |
| subsetCounts | Make counts object from subjectCounts |
