assay_funcs | Functions for loading assay information |
blineShift | Shift the baseline to 0 |
config_funcs | Functions for configuring the tcpl package |
flareFunc | Calculate the weighted mean of a square to detect plate... |
hill_utils | Functions to solve the Hill model |
interlaceFunc | Calculate the weighted mean of a square to detect interlace... |
is.odd | Check for odd numbers |
lu | Abbreviation for 'length(unique(x))' |
lw | Abbreviation for 'length(which(x))' |
mc1 | Perform level 1 multiple-concentration processing |
mc2 | Perform level 2 multiple-concentration processing |
MC2_Methods | List of level 2 multiple-concentration correction functions |
mc3 | Perform level 3 multiple-concentration processing |
MC3_Methods | List of level 3 multiple-concentration normalization methods |
mc4 | Perform level 4 multiple-concentration processing |
mc5 | Perform level 5 multiple-concentration processing |
MC5_Methods | Load list of level 5 multiple-concentration cutoff methods |
mc6 | Perform level 6 multiple-concentration processing |
MC6_Methods | Load list of level 6 multiple-concentration flag methods |
Models | Model objective functions |
mthd_funcs | Functions for managing processing methods |
query_funcs | Wrappers for sending queries and fetching results |
registerMthd | Add a new analysis method |
rgstr_funcs | Functions for registering & updating annotation information |
sc1 | Perform level 1 single-concentration processing |
SC1_Methods | List of level 1 single-concentration normalization functions |
sc2 | Perform level 2 single-concentration processing |
SC2_Methods | List of level 2 single-concentration hit-call functions |
sink.reset | Reset all sinks |
tcplAddModel | Draw a tcpl Model onto an exisiting plot |
tcplAICProb | Calculate the AIC probabilities |
tcplAppend | Append rows to a table |
tcplCascade | Do a cascading delete on tcpl screening data |
tcplCode2CASN | Convert chemical code to CAS Registry Number |
tcplCytoPt | Calculate the cytotoxicity point based on the "burst"... |
tcplDelete | Delete rows from tcpl databases |
tcplFit | Fit the data with the constant, hill, and gain-loss models |
tcplListFlds | Load the field names for a table |
tcplLoadChem | Load sample/chemical information |
tcplLoadClib | Load chemical library information |
tcplLoadData | Load tcpl data |
tcplLoadUnit | Load response units for assay endpoints |
tcplMakeAeidPlts | Create a .pdf with dose-response plots |
tcplPlotFitc | Plot the fit category tree |
tcplPlotFits | Plot summary fits based on fit and dose-response data |
tcplPlotM4ID | Plot fit summary plot by m4id |
tcplPlotPlate | Plot plate heatmap |
tcplPrepOtpt | Map assay/chemcial ID values to annotation information |
tcplRun | Perform data processing |
tcplSubsetChid | Subset level 5 data to a single sample per chemical |
tcplVarMat | Create chemical by assay matrices |
tcplWriteData | Write screening data into the tcpl databases |
tcplWriteLvl0 | Write level 0 screening data into the tcpl databases |
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