Files in dbottomly/oligoMask
Tools for masking out problematic Affymetrix probes using VCF files and the oligo package
DESCRIPTION
NAMESPACE
R/VariantMaskParams.R
R/helper_functions.R
R/tableSchemaList.R
R/vcf_parsing.R
README.md
data/SunGeneFS.RData
inst/NEWS
inst/extdata/NOD_B6_m37_chr19.db
inst/extdata/chr19_snvs_sort.vcf.gz
inst/extdata/chr19_snvs_sort.vcf.gz.tbi
inst/extdata/mogene_1_0_probe_chr19.db
inst/extdata/mogene_1_0_probe_chr19.tab.gz
inst/extdata/mogene_1_0_probe_chr19.tab.liftover.txt.gz
inst/extdata/oligoMask.template/DESCRIPTION
inst/extdata/oligoMask.template/NAMESPACE
inst/extdata/oligoMask.template/R/zzz.R
inst/extdata/oligoMask.template/inst/unitTests/test_package.R
inst/extdata/oligoMask.template/man/pkg.Rd
inst/extdata/oligoMask.template/tests/runTests.R
inst/unitTests/test_methods.R
man/.Rapp.history
man/TableSchemaList.Rd
man/VariantMaskParams.Rd
man/VcfDB.Rd
man/interface_funcs.Rd
man/oligoMask.Rd
man/vcf_parsing.Rd
tests/runTests.R
vignettes/oligoMask.Rnw
