plethy: R framework for exploration and analysis of respirometry data
In dbottomly/plethy: R framework for exploration and analysis of respirometry data

Description Details Author(s) References Examples

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Package:	plethy
Version:	0.99.4
Date:	2013-4-26
Imports:	Streamer, DBI, RSQLite, methods, IRanges, reshape2, batch
Depends:	R (>= 3.0.0)
Suggests:	RUnit, BiocGenerics
License:	GPL-3
biocViews:	DataImport, biocViews, Infastructure, DataRepresentation,TimeCourse
Collate:	BuxcoDB.R RetList.R buxco_db_v2.R dep_parser.R utilities.R
Packaged:	2013-08-01 21:02:18 UTC; bottomly
Built:	R 3.0.1; ; 2013-08-01 21:02:29 UTC; unix

Index:

BuxcoDB-class           Class '"BuxcoDB"'
dbImport                Import data into a BuxcoDB database
parse.buxco             Functions for parsing Buxco respirometry data
plethy-package          R framework for exploration and analysis of
                        respirometry data
buxco.sample.data.path  Path to a sample Buxco output file
sample.db.path          Path to a sample BuxcoDB database

Further information is available in the following vignettes:

`plethy`	plethy (source, pdf)

Daniel Bottomly, Marty Ferris

Maintainer: Daniel Bottomly <bottomly@ohsu.edu>

www.buxco.com

tmp_db <- tempfile()

bux.db <- parse.buxco(file.name=buxco.sample.data.path(), db.name = tmp_db)

head(retrieveData(bux.db))

bux.db <- makeBuxcoDB(tmp_db)

samples(bux.db)
variables(bux.db)