.Rbuildignore
          
        
          
            
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            .travis.yml
          
        
          
            
            DESCRIPTION
          
        
          
            
            GeCKO.Rproj
          
        
          
            
            NAMESPACE
          
        
          
            
            NEWS.md
          
        
          
            
            R/RcppExports.R
          
        
          
            
            R/export_idt.R
          
        
          
            
            R/get_library.R
          
        
          
            
            R/make_gRNAs.R
          
        
          
            
            R/make_table.R
          
        
          
            
            R/prep_idt.R
          
        
          
            
            README.md
          
        
          
            
            _pkgdown.yml
          
        
          
            
            codecov.yml
          
        
          
            
            docs/404.html
          
        
          
            
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            docs/protocols/broadgpp-pdna-library-amplification.pdf
          
        
          
            
            docs/protocols/broadgpp-sequencing-protocol.pdf
          
        
          
            
            docs/protocols/library_amplification.docx
          
        
          
            
            docs/protocols/liquid_culture_library_plasmid_reamp_bassik.pdf
          
        
          
            
            docs/protocols/moffat_lab_crispr_screen_protocol_v2.pdf
          
        
          
            
            docs/protocols/sabatini-0095library-screening-protocol.docx
          
        
          
            
            docs/protocols/sabatini_library_screening_protocol.docx
          
        
          
            
            docs/protocols/sabatini_library_transformation_protocol.docx
          
        
          
            
            docs/protocols/sabatini_pcr_protocol.docx
          
        
          
            
            docs/protocols/screen_protocol.docx
          
        
          
            
            docs/reference/GeCKO-package.html
          
        
          
            
            docs/reference/export_IDT.html
          
        
          
            
            docs/reference/figures/logo.jpg
          
        
          
            
            docs/reference/figures/logo.png
          
        
          
            
            docs/reference/get_library.html
          
        
          
            
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            docs/reference/make_gRNAs.html
          
        
          
            
            docs/reference/make_table.html
          
        
          
            
            docs/reference/prep_idt.html
          
        
          
            
            inst/extdata/human.fst
          
        
          
            
            inst/extdata/mouse.fst
          
        
          
            
            inst/extdata/temp/0095-grnas-ngs-reads-sabatini.xlsx
          
        
          
            
            inst/extdata/temp/broadgpp-brie-library-contents.txt
          
        
          
            
            inst/extdata/temp/broadgpp-brie-library-controls.csv
          
        
          
            
            inst/extdata/temp/broadgpp-brunello-library-contents.txt
          
        
          
            
            inst/extdata/temp/h1_sgrna_sequences.xlsx
          
        
          
            
            inst/extdata/temp/h2_sgrna_sequences.xlsx
          
        
          
            
            inst/extdata/temp/human-kinome-info-brunello.zip
          
        
          
            
            inst/extdata/temp/mouse-kinome-info-brie.zip
          
        
          
            
            inst/extdata/temp/sabatini_library_targets.xlsx
          
        
          
            
            inst/extdata/temp/supplementary_data_1_-_hs_library.xlsx
          
        
          
            
            inst/extdata/temp/supplementary_data_2_-_mm_library.xlsx
          
        
          
            
            inst/extdata/temp/tkov3_guide_sequence.xlsx
          
        
          
            
            man/GeCKO-package.Rd
          
        
          
            
            man/export_IDT.Rd
          
        
          
            
            man/figures/logo.jpg
          
        
          
            
            man/figures/logo.png
          
        
          
            
            man/get_library.Rd
          
        
          
            
            man/make_gRNAs.Rd
          
        
          
            
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            man/prep_idt.Rd
          
        
          
            
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            src/RcppExports.cpp
          
        
          
            
            src/oligo_mod.cpp
          
        
          
            
            src/revComplement.cpp