Man pages for dcalderon/rolypoly
Identifying Trait-Relevant Functional Annotations
| bootstrap_estimator | Bootstrap parameter estimates for confidence intervals. |
| calculate_annotation_block_heritability | Caclulate the contribution of block annotations to the... |
| calculate_block_values | Caclulate predicted block values based on block information... |
| calculate_expected_block_values_given_ld | Caclulate predicted block values based on block information... |
| cv_regularized_parameter_estimator | Perform regularization inference. |
| data_io | Functions for opening and organizing data. |
| inference | Inference functions. |
| main_wrapper | Main wrapper functions. |
| make_ld_matrix | Helper function to pull LD data from NCBI. |
| make_results_df | Helper function to make a summary table of results from... |
| parameter_estimator | Find parameter estimates for the data. |
| plot_rolypoly_annotation_estimates | Visualize parameter estimates after running inference |
| plot_rolypoly_annotation_ranking | Rank annotations by p-value after running inference |
| regularized_inference | Inference functions that include regularization |
| robust_parameter_estimator | Find robust parameter estimates for the data. |
| rolypoly | The rolypoly package for identifying annotations associated... |
| rolypoly_add_ld_corrected_gwas_block_scores | Add LD corrected block scores to rolypoly. |
| rolypoly_link_blocks_and_gwas | Link blocks and gwas |
| rolypoly_load_block_annotation | Load annotations for blocks of LD, in some cases this is a... |
| rolypoly_load_block_data | Block annotations, usually gene model. |
| rolypoly_load_gwas | Load gwas data |
| rolypoly_perform_inference | Run inference. |
| rolypoly_perform_regularized_inference | Run inference with added regularization. |
| rolypoly_plots | Plot functions. |
| rolypoly_roll | Main rolypoly wrapper function. |
| sim_block_annotation | Simulated block data annotation. |
| sim_expression_data_normalized | Simulated expression data. |
| sim_gwas_data | Simulated GWAS summary statistics |
| vectorize_rolypoly | Take a list of rolypoly data and vectorize it for inference. |
