Description Usage Arguments See Also
View source: R/data_functions.R
reads the xlsx
generated by the batscope export and brings it into
the right format.
1 2 3 4 5 6 7 8 9 10 | readBatscopeXLSX(
path = file.choose(),
batscope_version = "BatScope4",
species_col_name = "Auto Class 1",
quality_col_name = "Auto Class 1 Conf",
quality_threshold = 0.8,
time_zone = "UTC",
shiny_progress = FALSE,
shiny_progress_n = 1
)
|
path |
filename |
species_col_name |
what is the name of the column which contains the species name |
quality_col_name |
what is the name of the column which contains the relevant quality scores |
quality_threshold |
sequences with species assignment quality below this threshold will be discarded. |
time_zone |
time zone of timestamps |
shiny_progress |
display more progress info for shiny |
shiny_progress_n |
fraction of progres bar for multiple files |
Other data functions:
readBatscopeXLSXmultiple()
,
sumBatscopeData()
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