readBatscopeXLSX: read Batscope export

In dcangst/batplotr: Simple BatScope Data Visualization

read Batscope export

Description

reads the xlsx generated by the batscope export and brings it into the right format.

Usage

readBatscopeXLSX(
  path = file.choose(),
  batscope_version = "BatScope4",
  species_col_name = "Auto Class 1",
  quality_col_name = "Auto Class 1 Conf",
  quality_threshold = 0.8,
  time_zone = "UTC",
  shiny_progress = FALSE,
  shiny_progress_n = 1
)

Arguments

path	filename
species_col_name	what is the name of the column which contains the species name
quality_col_name	what is the name of the column which contains the relevant quality scores
quality_threshold	sequences with species assignment quality below this threshold will be discarded.
time_zone	time zone of timestamps
shiny_progress	display more progress info for shiny
shiny_progress_n	fraction of progres bar for multiple files

See Also

Other data functions: readBatscopeXLSXmultiple(), sumBatscopeData()

dcangst/batplotr documentation built on Dec. 16, 2024, 7:17 p.m.