dchodge/pilot.hcw
What the Package Does (One Line, Title Case)

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Files in dchodge/pilot.hcw
What the Package Does (One Line, Title Case)

.DS_Store
.RData
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/.Rhistory
R/RcppExports.R R/analysis.R R/clean_studies.R R/custom_funcs.R
R/hpc/dis_dep_cross/.RData
R/hpc/dis_dep_cross/.Rhistory
R/hpc/dis_dep_cross/dis_dep_cross.R
R/hpc/dis_dep_cross/output_1.out
R/hpc/dis_dep_cross/output_2.out
R/hpc/dis_dep_cross/output_3.out
R/hpc/dis_dep_cross/output_4.out
R/hpc/dis_dep_cross/output_5.out
R/hpc/dis_dep_cross/output_6.out
R/hpc/dis_dep_cross/output_7.out
R/hpc/dis_dep_cross/output_8.out
R/hpc/dis_dep_cross/output_9.out
R/hpc/dis_dep_cross/sub_dis_dep_cross
R/hpc/dis_dep_cross/sub_dis_dep_cross.e3421430.1
R/hpc/dis_dep_cross/sub_dis_dep_cross.e3421430.2
R/hpc/dis_dep_cross/sub_dis_dep_cross.e3421430.3
R/hpc/dis_dep_cross/sub_dis_dep_cross.e3421430.4
R/hpc/dis_dep_cross/sub_dis_dep_cross.e3421430.5
R/hpc/dis_dep_cross/sub_dis_dep_cross.e3421430.6
R/hpc/dis_dep_cross/sub_dis_dep_cross.e3421430.7
R/hpc/dis_dep_cross/sub_dis_dep_cross.e3421430.8
R/hpc/dis_dep_cross/sub_dis_dep_cross.e3421430.9
R/hpc/dis_dep_cross/sub_dis_dep_cross.o3421430.1
R/hpc/dis_dep_cross/sub_dis_dep_cross.o3421430.2
R/hpc/dis_dep_cross/sub_dis_dep_cross.o3421430.3
R/hpc/dis_dep_cross/sub_dis_dep_cross.o3421430.4
R/hpc/dis_dep_cross/sub_dis_dep_cross.o3421430.5
R/hpc/dis_dep_cross/sub_dis_dep_cross.o3421430.6
R/hpc/dis_dep_cross/sub_dis_dep_cross.o3421430.7
R/hpc/dis_dep_cross/sub_dis_dep_cross.o3421430.8
R/hpc/dis_dep_cross/sub_dis_dep_cross.o3421430.9
R/hpc/dis_dep_cross/sub_dis_dep_cross.pe3421430.1
R/hpc/dis_dep_cross/sub_dis_dep_cross.pe3421430.2
R/hpc/dis_dep_cross/sub_dis_dep_cross.pe3421430.3
R/hpc/dis_dep_cross/sub_dis_dep_cross.pe3421430.4
R/hpc/dis_dep_cross/sub_dis_dep_cross.pe3421430.5
R/hpc/dis_dep_cross/sub_dis_dep_cross.pe3421430.6
R/hpc/dis_dep_cross/sub_dis_dep_cross.pe3421430.7
R/hpc/dis_dep_cross/sub_dis_dep_cross.pe3421430.8
R/hpc/dis_dep_cross/sub_dis_dep_cross.pe3421430.9
R/hpc/dis_dep_cross/sub_dis_dep_cross.po3421430.1
R/hpc/dis_dep_cross/sub_dis_dep_cross.po3421430.2
R/hpc/dis_dep_cross/sub_dis_dep_cross.po3421430.3
R/hpc/dis_dep_cross/sub_dis_dep_cross.po3421430.4
R/hpc/dis_dep_cross/sub_dis_dep_cross.po3421430.5
R/hpc/dis_dep_cross/sub_dis_dep_cross.po3421430.6
R/hpc/dis_dep_cross/sub_dis_dep_cross.po3421430.7
R/hpc/dis_dep_cross/sub_dis_dep_cross.po3421430.8
R/hpc/dis_dep_cross/sub_dis_dep_cross.po3421430.9
R/hpc/dis_dep_full/.RData
R/hpc/dis_dep_full/.Rhistory
R/hpc/dis_dep_full/dis_dep_full.R
R/hpc/dis_dep_full/sub_dis_dep_full
R/hpc/hanam/.RData
R/hpc/hanam/dis_dep_cross.R R/hpc/hanam/dis_dep_full.R
R/hpc/hanam/sub_cross
R/hpc/hanam/sub_cross.e3421442.1
R/hpc/hanam/sub_cross.o3421442.1
R/hpc/hanam/sub_cross.pe3421442.1
R/hpc/hanam/sub_cross.po3421442.1
R/hpc/hanam/sub_full
R/make_fig.R R/models.R R/models_hanam_only.R R/models_hcw_pre_all.R R/models_hcw_pre_cross.R R/postplots.R R/serosolver_vac.R R/waics.R R/zzz.R
data/.DS_Store
data/hanam/part_data.RDS
data/hanam/sero_data.RDS
data/hanam_data.RDS
data/hcw_pre/part_data.RDS
data/hcw_pre/sero_data.RDS
data/hcw_pre/vac_data.RDS
data/hcwpre_data.RDS
data/modelinfo_cross_hanam.RDS
data/modelinfo_cross_hcw_pre.RDS
data/modelinfo_full_hcw_pre.RDS
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/.Rhistory
inst/extdata/hanam_data.xlsx
inst/extdata/hcw_pre_data.csv
inst/extdata/hcw_pre_vac.csv
inst/figs/.DS_Store
inst/figs/part/hanam_yob.pdf inst/figs/part/hcw_pre_yob.pdf inst/figs/part/hcw_yob.pdf inst/figs/schematic/fig1.pdf inst/figs/schematic/fig_denovo.pdf inst/figs/schematic/mu.pdf inst/figs/schematic/sigma.pdf inst/figs/schematic/tau.pdf inst/figs/sero/hcw_pre_titre_mean.pdf
inst/figs/sero/hcw_pre_titre_mean.png
inst/figs/sero/hcw_pre_titre_yob.pdf inst/figs/sero/hcw_pre_titre_yob_spline.pdf inst/figs/vac/hcw_1.pdf inst/figs/vac/hcw_pre_1.pdf inst/figs/vac/hcw_pre_titre_vac_spline.pdf inst/figs/vac/hcw_titre_vac_spline.pdf man/ab_kin_normalOLD.Rd man/ab_kin_vacOLD.Rd man/make_antigenic_maps_default_n.Rd man/make_antigenic_maps_vac1_n.Rd man/make_antigenic_maps_vac2_n.Rd
outputs/.DS_Store
outputs/hanam/.DS_Store
outputs/hanam/analysis/.DS_Store
outputs/hanam/analysis/figs/figA.pdf outputs/hanam/analysis/figs/figB.pdf outputs/hanam/analysis/figs/figC.pdf outputs/hanam/analysis/figs/figD.pdf outputs/hanam/analysis/figs/figE.pdf outputs/hanam/analysis/figs/figF.pdf
outputs/hanam/fits/.DS_Store
outputs/hanam/fits/dis_dep/.DS_Store
outputs/hanam/fits/dis_dep/cross_sec/cross/histplot.pdf
outputs/hanam/fits/dis_dep/cross_sec/cross/post_1_chain.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_1_indiv_ll.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_1_infection_histories.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_1_run_info.RData
outputs/hanam/fits/dis_dep/cross_sec/cross/post_2_chain.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_2_indiv_ll.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_2_infection_histories.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_2_run_info.RData
outputs/hanam/fits/dis_dep/cross_sec/cross/post_3_chain.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_3_indiv_ll.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_3_infection_histories.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_3_run_info.RData
outputs/hanam/fits/dis_dep/cross_sec/cross/post_4_chain.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_4_indiv_ll.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_4_infection_histories.csv
outputs/hanam/fits/dis_dep/cross_sec/cross/post_4_run_info.RData
outputs/hanam/fits/dis_dep/cross_sec/cross/schematic.pdf outputs/hanam/fits/dis_dep/cross_sec/cross/traceplot.pdf
outputs/hanam/fits/dis_dep/cross_sec/post_cross.Rdata
outputs/hanam/fits/dis_dep/full/.DS_Store
outputs/hanam/fits/dis_dep/full/LN/histplot.pdf
outputs/hanam/fits/dis_dep/full/LN/post_1_chain.csv
outputs/hanam/fits/dis_dep/full/LN/post_1_indiv_ll.csv
outputs/hanam/fits/dis_dep/full/LN/post_1_infection_histories.csv
outputs/hanam/fits/dis_dep/full/LN/post_1_run_info.RData
outputs/hanam/fits/dis_dep/full/LN/post_2_chain.csv
outputs/hanam/fits/dis_dep/full/LN/post_2_indiv_ll.csv
outputs/hanam/fits/dis_dep/full/LN/post_2_infection_histories.csv
outputs/hanam/fits/dis_dep/full/LN/post_2_run_info.RData
outputs/hanam/fits/dis_dep/full/LN/post_3_chain.csv
outputs/hanam/fits/dis_dep/full/LN/post_3_indiv_ll.csv
outputs/hanam/fits/dis_dep/full/LN/post_3_infection_histories.csv
outputs/hanam/fits/dis_dep/full/LN/post_3_run_info.RData
outputs/hanam/fits/dis_dep/full/LN/post_4_chain.csv
outputs/hanam/fits/dis_dep/full/LN/post_4_indiv_ll.csv
outputs/hanam/fits/dis_dep/full/LN/post_4_infection_histories.csv
outputs/hanam/fits/dis_dep/full/LN/post_4_run_info.RData
outputs/hanam/fits/dis_dep/full/LN/schematic.pdf outputs/hanam/fits/dis_dep/full/LN/traceplot.pdf
outputs/hanam/fits/dis_dep/full/LN_post_full.Rdata
outputs/hanam/fits/dis_dep/full/SP/histplot.pdf
outputs/hanam/fits/dis_dep/full/SP/post_1_chain.csv
outputs/hanam/fits/dis_dep/full/SP/post_1_indiv_ll.csv
outputs/hanam/fits/dis_dep/full/SP/post_1_infection_histories.csv
outputs/hanam/fits/dis_dep/full/SP/post_1_run_info.RData
outputs/hanam/fits/dis_dep/full/SP/post_2_chain.csv
outputs/hanam/fits/dis_dep/full/SP/post_2_indiv_ll.csv
outputs/hanam/fits/dis_dep/full/SP/post_2_infection_histories.csv
outputs/hanam/fits/dis_dep/full/SP/post_2_run_info.RData
outputs/hanam/fits/dis_dep/full/SP/post_3_chain.csv
outputs/hanam/fits/dis_dep/full/SP/post_3_indiv_ll.csv
outputs/hanam/fits/dis_dep/full/SP/post_3_infection_histories.csv
outputs/hanam/fits/dis_dep/full/SP/post_3_run_info.RData
outputs/hanam/fits/dis_dep/full/SP/post_4_chain.csv
outputs/hanam/fits/dis_dep/full/SP/post_4_indiv_ll.csv
outputs/hanam/fits/dis_dep/full/SP/post_4_infection_histories.csv
outputs/hanam/fits/dis_dep/full/SP/post_4_run_info.RData
outputs/hanam/fits/dis_dep/full/SP/schematic.pdf outputs/hanam/fits/dis_dep/full/SP/traceplot.pdf
outputs/hanam/fits/dis_dep/full/SP_post_full.Rdata
outputs/hanam/fits/dis_dep/full/sum_figs/waics.RDS
outputs/hanam/fits/dis_dep/full/sum_figs/waics.pdf
outputs/hcw_pre/.DS_Store
outputs/hcw_pre/analysis/figs/figA.pdf outputs/hcw_pre/analysis/figs/figB.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/novac/histplot.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/novac/schematic.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/novac/traceplot.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/sum_figs/mpsrf.RDS
outputs/hcw_pre/fits/dis_dep/cross_sec/sum_figs/mpsrf.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/sum_figs/posteriors.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/sum_figs/waics.RDS
outputs/hcw_pre/fits/dis_dep/cross_sec/sum_figs/waics.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/trimmed_post_cross.Rdata
outputs/hcw_pre/fits/dis_dep/cross_sec/trimmed_post_full.Rdata
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/histplot.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/schematic.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_base/traceplot.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/histplot.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/schematic.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_m/traceplot.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/histplot.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/schematic.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ms/traceplot.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/histplot.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/schematic.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mt/traceplot.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/histplot.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/schematic.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_mts/traceplot.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/histplot.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/schematic.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_s/traceplot.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/histplot.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/schematic.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_t/traceplot.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/histplot.pdf
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/schematic.pdf outputs/hcw_pre/fits/dis_dep/cross_sec/vac_ts/traceplot.pdf outputs/hcw_pre/fits/dis_dep/full/base/histplot.pdf
outputs/hcw_pre/fits/dis_dep/full/base/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/base/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/base/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/base/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/base/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/base/schematic.pdf outputs/hcw_pre/fits/dis_dep/full/base/traceplot.pdf outputs/hcw_pre/fits/dis_dep/full/m1/histplot.pdf
outputs/hcw_pre/fits/dis_dep/full/m1/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m1/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m1/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m1/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m1/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m1/schematic.pdf outputs/hcw_pre/fits/dis_dep/full/m1/traceplot.pdf outputs/hcw_pre/fits/dis_dep/full/m2/histplot.pdf
outputs/hcw_pre/fits/dis_dep/full/m2/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m2/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m2/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m2/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m2/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m2/schematic.pdf outputs/hcw_pre/fits/dis_dep/full/m2/traceplot.pdf outputs/hcw_pre/fits/dis_dep/full/m3/histplot.pdf
outputs/hcw_pre/fits/dis_dep/full/m3/post_1_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_1_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_1_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_1_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m3/post_2_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_2_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_2_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_2_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m3/post_3_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_3_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_3_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_3_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m3/post_4_chain.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_4_indiv_ll.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_4_infection_histories.csv
outputs/hcw_pre/fits/dis_dep/full/m3/post_4_run_info.RData
outputs/hcw_pre/fits/dis_dep/full/m3/schematic.pdf outputs/hcw_pre/fits/dis_dep/full/m3/traceplot.pdf
outputs/hcw_pre/fits/dis_dep/full/sum_figs/mpsrf.RDS
outputs/hcw_pre/fits/dis_dep/full/sum_figs/mpsrf.pdf outputs/hcw_pre/fits/dis_dep/full/sum_figs/posteriors.pdf
outputs/hcw_pre/fits/dis_dep/full/sum_figs/waics.RDS
outputs/hcw_pre/fits/dis_dep/full/sum_figs/waics.pdf
outputs/hcw_pre/fits/dis_dep/full/trimmed_post_full.Rdata
rcppfunchcw/.DS_Store
rcppfunchcw/DESCRIPTION
rcppfunchcw/NAMESPACE
rcppfunchcw/R/RcppExports.R
rcppfunchcw/man/rcpp_hello_world.Rd
rcppfunchcw/man/rcppfunchcw-package.Rd
rcppfunchcw/src/RcppExports.cpp
rcppfunchcw/src/RcppExports.o
rcppfunchcw/src/ab_func_dis.cpp
rcppfunchcw/src/ab_func_dis.o
rcppfunchcw/src/ab_func_form.cpp
rcppfunchcw/src/ab_func_form.o
rcppfunchcw/src/ab_func_titre.cpp
rcppfunchcw/src/ab_func_titre.o
rcppfunchcw/src/rcpp_hello_world.o
rcppfunchcw/src/rcppfunchcw.so
vingettes/debug/debug.Rmd vingettes/hanam/hanam_compare.Rmd vingettes/hanam/hanam_models.Rmd vingettes/hanam/hanam_static.Rmd vingettes/hcw_pre/hcwpre_compare.Rmd vingettes/hcw_pre/hcwpre_models.Rmd vingettes/hcw_pre/hcwpre_static.Rmd
dchodge/pilot.hcw documentation built on Feb. 2, 2022, 11:29 p.m.

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