dts_setup: Set up a model for dts_diffeqn

In dd-harp/MicroMoB: Discrete Time Systems for Robust Analytics for Malaria Policy (RAMP), and Transmission Dynamics and Control of Mosquito-Borne Pathogens Transmission

Set up a model for dts_diffeqn

Description

Set up a model for dts_diffeqn

Usage

dts_setup(
  modelName = "unnamed",
  MYZname = "RM",
  Xname = "SIS",
  Lname = "trace",
  nPatches = 1,
  nVectors = 1,
  nHosts = 1,
  HPop = 1000,
  membership = 1,
  MYZopts = list(),
  EIPname = "fixed",
  calK = "herethere",
  calKopts = list(),
  Xopts = list(),
  BFopts = list(),
  residence = 1,
  searchB = 1,
  F_circadian = NULL,
  TimeSpent = "athome",
  TimeSpentOpts = list(),
  searchQ = 1,
  Lopts = list()
)

Arguments

modelName	is a name for the model (arbitrary)
MYZname	is a character string defining a MYZ model
Xname	is a character string defining a X model
Lname	is a character string defining a L model
nPatches	is the number of patches
nVectors	is the number of vector species
nHosts	is the number of vertebrate host species
HPop	is the number of humans in each patch
membership	is a vector that describes the patch where each aquatic habitat is found
MYZopts	a list to configure the MYZ model
EIPname	is the name of the EIP model
calK	is either a calK matrix or a string that defines how to set it up
calKopts	are the options to setup calK
Xopts	a list to configure the X model
BFopts	a list to configure the blood feeding model
residence	is a vector that describes the patch where each human stratum lives
searchB	is a vector of search weights for blood feeding
F_circadian	is a function describing mosquito daily activity
TimeSpent	is either a TimeSpent matrix or a string to call a function that sets it up
TimeSpentOpts	are the options to setup TimeSpent
searchQ	is a vector of search weights for egg laying
Lopts	a list to configure the L model

Value

a list

dd-harp/MicroMoB documentation built on June 6, 2024, 4:43 p.m.