make_MYZpar_RMlumpy: Make parameters for RMlumpy ODE adult mosquito model

In dd-harp/MicroMoB: Discrete Time Systems for Robust Analytics for Malaria Policy (RAMP), and Transmission Dynamics and Control of Mosquito-Borne Pathogens Transmission

Make parameters for RMlumpy ODE adult mosquito model

Description

Make parameters for RMlumpy ODE adult mosquito model

Usage

make_MYZpar_RMlumpy(
  nPatches,
  MYZopts = list(),
  EIPname,
  calK,
  p = 11/12,
  sigma = 1/8,
  f = 0.3,
  q = 0.95,
  eip = 12,
  nu = 1,
  eggsPerBatch = 60,
  p_mod = "static",
  sigma_mod = "static",
  f_mod = "static",
  q_mod = "static",
  nu_mod = "static"
)

Arguments

nPatches	is the number of patches, an integer
MYZopts	a list of values that overwrites the defaults
EIPname	a string: the class name for the EIP model
calK	a mosquito dispersal matrix of dimensions nPatches by nPatches
p	daily mosquito survival
sigma	emigration rate
f	feeding rate
q	human blood fraction
eip	the maximum number of cohorts in the EIP
nu	oviposition rate, per mosquito
eggsPerBatch	eggs laid per oviposition
p_mod	a name to dispatch F_p
sigma_mod	a name to dispatch F_sigma
f_mod	a name to dispatch F_f
q_mod	a name to dispatch F_q
nu_mod	a name to dispatch F_nu

Value

a list

dd-harp/MicroMoB documentation built on June 6, 2024, 4:43 p.m.