| add_path | Modify parts of the ramp path by name. |
| as.lfn | Return a path as a logical filename, which is a relative... |
| as.path | Convert a ramp path into a simple string filename for reading... |
| cached_config | Get the configuration file and store as package global. |
| clear.provenance | Clear provenance data for a new run. |
| cluster_logging | Set up logging for running on the cluster. |
| data_configuration | Reads configuration file on where to download data. |
| dot-baseLogger | This is the namespace in which all logging messages are... |
| dot-errorLogger | Create a child namespace that also logs errors to a file. |
| dot-get.shp.metadata | Return extra metadata associated with .shp file |
| dot-rampdata.config | This variable contains configuration for the file locations. |
| dot-replace.methods.with.spy | Replace methods in global namespace with the spying methods... |
| download_bioko_grids | Retrieve Bioko grid data. |
| download_worldpop | Retrieve worldpop data. |
| ensure_on_server | Ensure a set of local files are on the server. |
| ensure_present | Ensure files are available locally. |
| get_from_ihme | Use scp to retrieve data. |
| get.input.files | Get the list of files that were recorded as inputs. |
| get.metadata | Returns metadata for a file |
| get.output.files | Get the list of files that were recorded as outputs |
| initialize_workflow | Read a workflow file in order to set up versions of inputs. |
| inverse_ramp_path1 | Turns a relative path into a ramp path. |
| local_logging | Set up logging for use on a local machine. |
| localLoggingFunctions | Functions to emit logging messages. |
| local_path | The fully-rooted local path to a file. |
| log_module | Set the logging level on some part of a package. |
| project_path | Creates a path relative to the project root |
| prov.input.file | Record that this code used this input file. |
| prov.output.file | Record that this code used this output file. |
| rampdata | rampdata: put and get data for RAMP calculations |
| ramp_path | Make a RAMP path. |
| ramp_path1 | Formats a base path for a file given all keys. |
| ramp_path_from_rooted | Convert a single string into a ramp path. |
| read_workflow_config | Read a workflow description file. |
| save_source | Save information about a directory or data file. |
| send_to_ihme | Use scp to send data. |
| un7zip | Unzip a 7zip file. |
| workflow_path | Get a ramp_path from a workflow configuration file. |
| write.meta.data | Write the list of input files to a file on disk. |
