add_path | Modify parts of the ramp path by name. |
as.lfn | Return a path as a logical filename, which is a relative... |
as.path | Convert a ramp path into a simple string filename for reading... |
cached_config | Get the configuration file and store as package global. |
clear.provenance | Clear provenance data for a new run. |
cluster_logging | Set up logging for running on the cluster. |
data_configuration | Reads configuration file on where to download data. |
dot-baseLogger | This is the namespace in which all logging messages are... |
dot-errorLogger | Create a child namespace that also logs errors to a file. |
dot-get.shp.metadata | Return extra metadata associated with .shp file |
dot-rampdata.config | This variable contains configuration for the file locations. |
dot-replace.methods.with.spy | Replace methods in global namespace with the spying methods... |
download_bioko_grids | Retrieve Bioko grid data. |
download_worldpop | Retrieve worldpop data. |
ensure_on_server | Ensure a set of local files are on the server. |
ensure_present | Ensure files are available locally. |
get_from_ihme | Use scp to retrieve data. |
get.input.files | Get the list of files that were recorded as inputs. |
get.metadata | Returns metadata for a file |
get.output.files | Get the list of files that were recorded as outputs |
initialize_workflow | Read a workflow file in order to set up versions of inputs. |
inverse_ramp_path1 | Turns a relative path into a ramp path. |
local_logging | Set up logging for use on a local machine. |
localLoggingFunctions | Functions to emit logging messages. |
local_path | The fully-rooted local path to a file. |
log_module | Set the logging level on some part of a package. |
project_path | Creates a path relative to the project root |
prov.input.file | Record that this code used this input file. |
prov.output.file | Record that this code used this output file. |
rampdata | rampdata: put and get data for RAMP calculations |
ramp_path | Make a RAMP path. |
ramp_path1 | Formats a base path for a file given all keys. |
ramp_path_from_rooted | Convert a single string into a ramp path. |
read_workflow_config | Read a workflow description file. |
save_source | Save information about a directory or data file. |
send_to_ihme | Use scp to send data. |
un7zip | Unzip a 7zip file. |
workflow_path | Get a ramp_path from a workflow configuration file. |
write.meta.data | Write the list of input files to a file on disk. |
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