rampdata: rampdata: put and get data for RAMP calculations

In dd-harp/rampdata: Finds data and places data for the RAMP project

Description

This package is responsible for transfer of data for processing by RAMP projects. Data is either on the institute's repository or on cloud storate. This transfers that data to your machine on request, or it transfers that data from your machine to the appropriate place on the repository.

Details

There is a vignette with an example notebook using rampdata: vignette("ramp_example", package = "rampdata")

User Interface Methods

• local_path - The fully-rooted local path to a file.

• ensure_present - Ensure files are available locally.

• ensure_on_server - Ensure a set of local files are on the server.

• data_configuration - Reads configuration file on where to download data.

• save_source - Save information about a directory or data file.

Local Path Implementation

• ramp_path - Formats a base path for a file given all keys.

• inverse_ramp_path - Turns a relative path into a ramp path.

• project_path - Creates a path relative to the project root.

Transfer with Cluster

• get_from_ihme - Use scp to retrieve data.

• send_to_ihme - Use scp to send data.

• un7zip - Unzip a 7zip file.

• download_worldpop - Retrieve worldpop data.

• download_bioko_grids - Retrieve Bioko grid data.

dd-harp/rampdata documentation built on Sept. 13, 2021, 9:32 p.m.