msigdbr: Retrieve the msigdbr data frame
In dekanglv/RpacEx: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Description Usage Arguments Value Examples

Retrieve the msigdbr data frame

1 2	msigdbr(species = "Homo sapiens", category = NULL, subcategory = NULL)

`species`	species name, such as Homo sapiens, Mus musculus, etc.
`category`	collection, such as H, C1, C2, C3, C4, C5, C6, C7.
`subcategory`	sub-collection, such as CGP, MIR, BP, etc.

a data frame of gene sets with one gene per row

# all human gene sets
m = msigdbr(species = "Homo sapiens")

# mouse C2 (curated) CGP (chemical and genetic perturbations) gene sets
m = msigdbr(species = "Mus musculus", category = "C2", subcategory = "CGP")