apply_fallback_rates: applies the estimated fallback rates to the estiamted...

In delomast/escapeLGD: Escapement Estimation at Lower Granite Dam

applies the estimated fallback rates to the estiamted ascension composition to yield estimated escapement

Description

applies the estimated fallback rates to the estiamted ascension composition to yield estimated escapement

Usage

apply_fallback_rates(
  breakdown,
  fallback_rates,
  split_H_fallback = c("var1", "var2", "both"),
  split_HNC_fallback = c("var1", "var2", "both"),
  split_W_fallback = c("var1", "var2", "both"),
  H_groups = NULL,
  HNC_groups = NULL,
  W_groups = NULL,
  stratAssign_fallback,
  stratAssign_comp,
  alpha_ci = 0.1,
  output_type = c("summary", "W_boot", "full")
)

Arguments

breakdown	The output of either HNC_expand_unkGSI, HNC_expand, or ascension_composition
fallback_rates	The fallback rates portion of the output of nightFall
split_H_fallback	one of "var1", "var2", or "both" indicating which variable(s) should be used to link estimates of composition with fallback rates for "H" fish
H_groups	NULL to get templates returned, or a tibble linking categories to stockGroups
HNC_groups	NULL to get templates returned, or a tibble linking categories to stockGroups
W_groups	NULL to get templates returned, or a tibble linking categories to stockGroups
stratAssign_fallback	tibble with sWeek, stockGroup, stratum showing what stratum each sWeek corresponds to for each stockGroup
stratAssign_comp	tibble with sWeek, stratum showing what stratum each sWeek corresponds to for composition estimation using the trap data
alpha_ci	the alpha value for CI calculation
output_type	one of "summary", "W_boot", or "full" dependign on the output type you want
split_HNC_fallbackone	of "var1", "var2", or "both" indicating which variable(s) should be used to link estimates of composition with fallback rates for "HNC" fish
split_W_fallbackone	of "var1", "var2", or "both" indicating which variable(s) should be used to link estimates of composition with fallback rates for "W" fish

delomast/escapeLGD documentation built on June 9, 2025, 10:52 p.m.