Man pages for delomast/fishCompTools
Tools to Assist With Fish Composition Estimates, Particularly Using Parental Based Tagging (PBT)
| estimStrataMCpbt | This function uses the input created by 'prepStrata' to... |
| estimStrataPropClip | This function uses the input created by... |
| flex_negllh_allGSI | calculate the negative log-likelihood with only PBT and GSI... |
| flex_negllh_var | calculate the negative log-likelihood with PBT, GSI... |
| generatePBTGSIdata | This function simulates data for one strata. |
| marginalize_SD | Produce estimates and CIs after marginalizing out a given... |
| MLEwrapper | Find maximum likelihood estimates for composition |
| multByEscapement | Multiplies escapement estimates by composition estimates |
| params_grad | this calculates the gradient with respect to the params being... |
| params_grad_var | this calculates the gradient with respect to the params being... |
| prepOneStrata | This function takes data as a dataframe with one row per... |
| prepStrata | This function prepares data to run multiple strata |
| prepStrataPropClip | This function prepares the data to run multiple strata for... |
| run_time_graph | Making run-timing graphs from output of 'SCOBI_deux' |
| SCOBI_deux | Uses PBT assignments and other data to estimate group... |
| SCOBI_deux_fast | Uses PBT assignments and other data to estimate group... |
| scobiNoPBT | generates estiamtes and CIs usings census count and trap data... |
