run_time_graph: Making run-timing graphs from output of 'SCOBI_deux'

In delomast/fishCompTools: Tools to Assist With Fish Composition Estimates, Particularly Using Parental Based Tagging (PBT)

Description

This function assumes that proportions or fish of each type are constant within each strata it is not meant to be a particularly robust method of looking at run timing, rather it is for exploratory use

Usage

run_time_graph(
  windowData = NULL,
  Run = "output",
  dailyCountFile = NULL,
  estimTotalsFile = NULL,
  makePlot = FALSE
)

Arguments

windowData	This is the exact same windowData input that you used when you ran SCOBI_deux.
Run	This is the exact same input for Run you used when you ran SCOBI_deux. The function looks for files with this prefix in the working directory to use to make the graph.
dailyCountFile	This either a dataframe or it is the path to a csv file that has a list of counts for the days (or other timestep) that is your basic unit for graphing. This csv should have two columns, the first column is the group (matching the group - leftmost column - in your window count file) for that day and the second column is the count on that day. Each consecutive day should be a new row with the first day being the first row and the last day being the last row. The group will be repeated once for each day within that group with the count for that particular day.
estimTotalsFile	The path to the "Estim_Total" file that you want to break into daily counts and (optionally) make a graph. This can also be a character vector to multiple files.
makePlot	If TRUE, a pdf will be saved in the working directory of a run timing plot.

Details

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delomast/fishCompTools documentation built on Jan. 11, 2021, 1:51 a.m.