README.md

In delomast/gRandma: Inference of Grandparentage With Genetic Markers

gRandma

grandparentage inference Inference of grandparentage based on genetic markers

Citation for grandparent inference/error estimation algorithms: Delomas, T.A. and Campbell, M.R. 2022. Grandparent inference from genetic data: The potential for parentage-based tagging programs to identify offspring of hatchery strays. North American Journal of Fisheries Management. https://doi.org/10.1002/nafm.10714

Citation for single parent inference/error estimation algorithms: Steele, C.A., et al. 2022. Single-parentage assignments reveal negative-assortative mating in an endangered salmonid. Ecology and Evolution. https://doi.org/10.1002/ece3.8846

Potentially some other relationships as well, but main goal is grandparentage Written with mixed stock analyses in mind (i.e. descendants of multiple populations are mixed together at sampling) Performs inference and error estimation Current options: "single-sided" grandparentage: a trio of grandchild + both maternal grandparents (or both paternal grandparents) single parentage: a pair of parent + offspring

Install with:

devtools::install_github("delomast/gRandma")

To install and view the vignette:

devtools::install_github("delomast/gRandma", build_vignettes = TRUE)
browseVignettes("gRandma")

delomast/gRandma documentation built on March 8, 2024, 2:26 a.m.