toSequoiaInput_EFGLmh: Build Sequioa Input files for Tom's template script

In delomast/singleSequoia: Tools for Single Parent Assignment with Sequoia

Build Sequioa Input files for Tom's template script

Description

This interfaces with EFGLmh objects to build files expected by Tom's template Sequoia script for single parent assignment (actual assignments, not simulations)

Usage

toSequoiaInput_EFGLmh(
  x,
  baselinePops,
  mixturePops,
  markerList = NULL,
  prefix = ""
)

Arguments

x	EFGLdata object with potential parents and offspring
baselinePops	names of pops with potential parents
mixturePops	names of pops with offspring
markerList	list of markers to use, if not provided the default is to use all
prefix	This is a string that will be used as the prefix for the two output files. Default is to have no prefix.

Value

Writes files to the working directory that can be uploaded to the server and used to run single parentage with Sequoia using Tom's template script

delomast/singleSequoia documentation built on June 14, 2022, 1:08 p.m.