abstR: Function to retrive article abstract data

In devSJR/mdcr: Import and processing of count data and unstructured data

Description

Retrive the article data from a PubMed ID.

Usage

abstR(pmid = NULL, db = "pubmed", service = "Entrez")

Arguments

pmid	is a list of PubMed ID (PMID) to look for (e.g., 17284678,9997)
db	is the data base to look for abstracts (e.g., pmc or pubmed)
service	is the service name (e.g., Entrez)

Details

The function uses internally the seRvice function to set an service, from which the data are retrived. The Entrez service is used by default. The result of the scRapper function is a XML structured output.

Author(s)

Stefan Roediger, Michal Burdukiewcz

References

Eric Sayers, The E-utilities In-Depth: Parameters, Syntax and More, 2015, http://www.ncbi.nlm.nih.gov/books/NBK25499/

Examples

abstR(puRepmid(scrpR("apoptosis", retmax = 3)))

devSJR/mdcr documentation built on May 15, 2019, 5:05 a.m.