spott: Calculate the central tendency of an image object

Description Usage Arguments Details Author(s) References

Description

Selects objects based on a specific moment parameter, where currently only majoraxis (recalculated as micro meter) is used.

Usage

1
spott(img.raw, img.pp, img.moment, quantile = 0.03, ...)

Arguments

img.raw

is the raw image that will used for the detection of the nucleus

img.pp

is input of the type img.processor object (see img.processor micR)

img.moment

is an computeFeatures.moment object (see computeFeatures.moment EBImage)

quantile

is a value to define the values removed by quantile filtering

...

is the input for the img.selector subroutine (see img.selector micR)

Details

This function calculates the mean of a quantile filtered image object.

Author(s)

Stefan Roediger

References

T.B.D.


devSJR/micR documentation built on May 15, 2019, 5:06 a.m.