Files in devonjkohler/MSstatsLiP
LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/BarcodePlotLiP.R
R/MSstatsLiP.R
R/PCAPlotLiP.R
R/RcppExports.R
R/SkylinetoMSstatsLiPFormat.R
R/SpectronauttoMSstatsLiPFormat.R
R/calculateTrypticity.R
R/correlationPlotLiP.R
R/dataDoc.R
R/dataProcessPlotsLiP.R
R/dataSummarizationLiP.R
R/groupComparisonLiP.R
R/groupComparisonPlotsLiP.R
R/locatePTM.R
R/msstatslip-package.R
R/trypticHistogramLiP.R
R/utils_checks.R
README.md
data/LiPRawData.rda
data/MSstatsLiP_formatted_data.rda
data/SkylineTest.rda
data/TrPRawData.rda
data/model_data.rda
data/summarized_data.rda
inst/NEWS.rd
inst/extdata/ExampleFastaFile.fasta
inst/extdata/O13297.fasta
inst/tinytest/test_SkylinetoMSstatsLiPFormat.R
inst/tinytest/test_SpectronauttoMSstatsLiPFormat.R
inst/tinytest/test_dataProcessPlotsLiP.R
inst/tinytest/test_dataSummarizationLiP.R
inst/tinytest/test_groupComparisonLiP.R
inst/tinytest/test_groupComparisonPlotsLiP.R
inst/tinytest/test_trypticHistogramLiP.R
man/BarcodePlotLiP.Rd
man/LiPRawData.Rd
man/MSstatsLiP.Rd
man/MSstatsLiP_Summarized.Rd
man/MSstatsLiP_data.Rd
man/MSstatsLiP_model.Rd
man/PCAPlotLiP.Rd
man/SkylineTest.Rd
man/SkylinetoMSstatsLiPFormat.Rd
man/SpectronauttoMSstatsLiPFormat.Rd
man/TrPRawData.Rd
man/annotSite.Rd
man/calculateTrypticity.Rd
man/correlationPlotLiP.Rd
man/dataProcessPlotsLiP.Rd
man/dataSummarizationLiP.Rd
man/groupComparisonLiP.Rd
man/groupComparisonPlotsLiP.Rd
man/locateMod.Rd
man/locatePTM.Rd
man/tidyFasta.Rd
man/trypticHistogramLiP.Rd
src/.gitignore
src/RcppExports.cpp
src/model_adjustment.cpp
tests/tinytest.R
vignettes/MSstatsLiP_Workflow.Rmd
