aparcstats_files_ABIDE: Return a hemilist with the paths of the aparc stats files for...

In dfsp-spirit/brainnet: Machine learning on structural neuroimaging data for R

Return a hemilist with the paths of the aparc stats files for the ABIDE dataset.

Description

Return a hemilist with the paths of the aparc stats files for the ABIDE I dataset. The files come pre-computed with the brainnet package. They were created by running the FreeSurfer tool 'aparcstats2table' on the full ABIDE I dataset (subjects with structural image data only, of course) several times (with thickness, volume and area as the 'measure' argument).

Usage

aparcstats_files_ABIDE(measure = "thickness")

Arguments

measure

character string, a measure for which the stats files are available. Typically one of 'thickness', 'volume', 'area', unless you have computed more and added them manually.

Value

a named list with keys 'lh' and 'rh', both hold a filepath to the parcellation statistics file for the respective hemisphere.

Note

The asegstats (for the volume) are also available in 'inst/extdata' folder of this package as the file 'ABIDE_asegstats.tsv', but the path cannot be retrieved with this function as there are no hemi-specific files, just get it manually.

See Also

Other ABIDE functions: aparcstats_files_IXI(), load_ABIDE_metadata_males(), load_ABIDE_metadata()

dfsp-spirit/brainnet documentation built on July 11, 2022, 5:54 a.m.