CTSgetR: CTSgetR

In dgrapov/CTSgetR: R interface to the Chemical Translation System (CTS) API https://cts.fiehnlab.ucdavis.edu/

CTSgetR

Description

CTSgetR

Usage

CTSgetR(id, from, to, db_name = "ctsgetr.sqlite", ...)

Arguments

id	a vector of metabolite identifier(s) or name(s) to translate see valid_to and valid_from
from	Database name describing id see valid_from
to	Database name to translate id see valid_to
db_name	string path for sqlite database to store cached results in see valid_to

Details

Interface to CTS (http://cts.fiehnlab.ucdavis.edu/) for metabolite identifier translation between > 200 of the most common biological databases including: Chemical Name, InChIKey, PubChem CID, ChemSpider, BioCyc, ChEBI, CAS, HMDB, KEGG and LipidMAPS.

Value

data frame of results including from (fromIdentifier), id (searchTerm), to (toIdentifier) and translated values

See Also

single_CTSgetR

Examples

## Not run: 
id<-c("C15973","C00026","C05381")
from<-"KEGG"
to<-"PubChem CID"
CTSgetR(id,from,to)

## End(Not run)

dgrapov/CTSgetR documentation built on July 28, 2024, 9:02 p.m.