read_quant5: Extract raw data (normalized reporter), sample name and...

In dhammarstrom/qpcrpal: Import, Organize and Analyze qPCR data

Description

Extract raw data (normalized reporter), sample name and target name from Quantstudio 5 exports.

Usage

read_quant5(filename, sample_separator = " ", sample_ID = 1,
  sample_condition = 2, sample_timepoint = 3, sample_replicate = 4,
  start_cycle = 1, end_cycle = 40, skip = 19)

Arguments

filename	A path or filename of an excel file containing 'Results' and 'Raw Data' exported from QuantStudio
sample_separator	A character string specifying separator of 'Sample Name' string.
sample_ID	A integer specifying sample sub-info position in 'Sample Name' from export. Default=1
sample_condition	Default=2
sample_timepoint	Default=3
sample_replicate	Default=4
start_cycle	First cycle to extract from export, default=1
end_cycle	Last cycle to extract from export, default=40
skip	How many rows needs to be skipped before column names in the export?

Value

A data frame containing sample and target information and raw data over 40 cycles.

dhammarstrom/qpcrpal documentation built on Feb. 2, 2021, 9:12 p.m.