analysis/reports/submission1/accessory/old_reports/95_interval_portal.md

In diazrenata/scadsanalysis: What the Package Does (One Line, Title Case)

Synthesis report

Datasets in S and N space

Here is where our communities fall in S and N space:

Here is how that translates into the size of the feasible set:

The small datasets are basically all FIA.

Note that the color scale is log transformed, so the largest communities have e^331.5401042, or 9.683621310^{143}, elements in the feasible set!

95 interval vs nparts

## Warning: Removed 11 rows containing missing values (geom_point).

## Warning: Removed 15 rows containing missing values (geom_point).

Binned by ranked nparts and ranked 95 intervals

## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.

## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.

## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.

## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.

## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.

Small mcdb

## Warning: Removed 100 rows containing missing values (geom_point).

##   sim   source  dat site singletons s0  n0   nparts     skew  shannon   simpson
## 1 -99 observed mcdb 1724       TRUE 24 118 67867303 2.414811 1.990816 0.7806665
##   skew_percentile shannon_percentile simpson_percentile skew_range
## 1         77.6194           0.100025            0.60015   4.463304
##   simpson_range nsamples   skew_sd skew_mean simpson_sd simpson_mean  skew_2p5
## 1     0.3047975     3999 0.7545883  1.856245 0.03081419    0.9025698 0.5497199
##   skew_97p5  skew_95   skew_min simpson_max simpson_2p5 simpson_5 simpson_97p5
## 1  3.522572 3.218997 -0.2232043   0.9515944   0.8208489 0.8452743    0.9418271
##   skew_95_ratio_2t simpson_95_ratio_2t skew_95_ratio_1t simpson_95_ratio_1t
## 1        0.6660653           0.3969133        0.7712226           0.3488219
##   log_nparts log_nsamples log150_nparts   prop_found found_all
## 1   18.03306       8.2938      3.598958 5.892381e-05     FALSE

## Warning: Removed 1 rows containing non-finite values (stat_density).

diazrenata/scadsanalysis documentation built on May 14, 2021, 6:59 p.m.