resamp_info: Import and summarize results from analyses set by the...
In diegosasso/ontobayes: Ontology-aware Bayesian Phylogenetic Information Analysis of Morphological Data
resamp_info R Documentation
Import and summarize results from analyses set by the resamp_galax function.
Description
Import and summarize results from analyses set by the resamp_galax function.
Usage
resamp_info(roots = roots, nsamp = 100, runs = 2, foldername = "resamp")
Arguments
roots
character, a named vector with the ontology IDs of the anatomical data subsets to produce MrBayes NEXUS files.
IDs and names should match those in the second and third columns of the ids data.frame, respectively.
nsamp
integer, sets the number of samples for the resampling analysis.
runs
integer, sets the number of independent runs of mcmc in the MrBayes commands block. Default is set to 2.
foldername
character name of the output folder with all Galax output files.
Value
A list of matrices with values posterior coverage, Bayesian phylogenetic information (BPI) content, and phylogenetic dissonance
among mcmc runs and among data subsets (if roots include more than one data subset) for each data subset specified in roots.
diegosasso/ontobayes documentation built on May 3, 2022, 10:23 p.m.
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| resamp_info | R Documentation |
Import and summarize results from analyses set by the resamp_galax function.
Description
Import and summarize results from analyses set by the resamp_galax function.
Usage
resamp_info(roots = roots, nsamp = 100, runs = 2, foldername = "resamp")
Arguments
roots |
character, a named vector with the ontology IDs of the anatomical data subsets to produce MrBayes NEXUS files. IDs and names should match those in the second and third columns of the ids data.frame, respectively. |
nsamp |
integer, sets the number of samples for the resampling analysis. |
runs |
integer, sets the number of independent runs of mcmc in the MrBayes commands block. Default is set to 2. |
foldername |
character name of the output folder with all Galax output files. |
Value
A list of matrices with values posterior coverage, Bayesian phylogenetic information (BPI) content, and phylogenetic dissonance among mcmc runs and among data subsets (if roots include more than one data subset) for each data subset specified in roots.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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