allenpvc: Adult mouse cortical cell taxonomy by single cell...
In diogo-branco/allenpvc: GEO accession data GSE71585 as a SingleCellExperiment
Description
Format
Details
Source
References
Examples
Description
Celular taxonomy of the primary visual cortex in adult mice based on single
cell RNA-sequencing from a study performed by the Allen Institute for Brain
Science. In said study 49 transcriptomic cell types are identified.
This data set is the supplementary data from GEO accession
GSE71585
encapsulated in a SingleCellExperiment.
Format
The data is encapsulated in a
SingleCellExperiment object available
through ExperimentHub
Details
See the vignette for examples of using these data in differential gene
expression analysis.
browseVignettes("allenpvc")
Details of how this data was created are in the inst/scripts/ directory of
the source package.
Source
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71585
References
Tasic, Bosiljka, et al. Adult mouse cortical cell taxonomy
revealed by single cell transcriptomics. Nature neuroscience 19.2 (2016):
335.
Examples
1
allenpvc()
diogo-branco/allenpvc documentation built on May 5, 2019, 12:30 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Format Details Source References Examples
Description
Celular taxonomy of the primary visual cortex in adult mice based on single
cell RNA-sequencing from a study performed by the Allen Institute for Brain
Science. In said study 49 transcriptomic cell types are identified.
This data set is the supplementary data from GEO accession
GSE71585
encapsulated in a SingleCellExperiment.
Format
The data is encapsulated in a
SingleCellExperiment object available
through ExperimentHub
Details
See the vignette for examples of using these data in differential gene expression analysis.
browseVignettes("allenpvc")
Details of how this data was created are in the inst/scripts/ directory of the source package.
Source
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71585
References
Tasic, Bosiljka, et al. Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. Nature neuroscience 19.2 (2016): 335.
Examples
1 | allenpvc()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.