add_ingredients: Add ingredients

In diogocamacho/cauldron: Cauldron: making data for DRUID

Description

This function takes in data from multiple sources and generates a drug-term matrix as required by 'DRUID'.

Usage

add_ingredients(cmap_data, small_molecules, ctd_data, np_data, lincs_data,
  new_data = NULL)

Arguments

cmap_data	Data from CMAP2 from the Harmonizome
small_molecules	Data from small molecules treatments on cell lines obtained from the Harmonizome
ctd_data	Data from CTD, filtered on mRNA effects from drugs
np_data	Data on MCF7 cell lines treated with natural products from traditional chinese medicine
lincs_data	Data from LINCS L1000 from the Harmonizome

Value

A list of TF-IDF matrices and respective cross-product vectors.

diogocamacho/cauldron documentation built on June 6, 2019, 8:45 a.m.