Submit jobs to a grid engine easily using submitr
. Right now we only allow submitting jobs to a local LSF.
Future versions will allow remote access, job retrieval, etc.
submitr
is designed to submit jobs from a jupyter notebook
using the IRkernel
.
First load the package:
library(submitr)
Then prepare your job like this:
# this is the path to your rscript file <- "/the/rscript/iwannt/to/submit.R" # these are the arguments for the job scheduler gargs <- c("-W4:30", "-M10000", "-n8") # these are the arguments for your R script sargs <- c("my.input.file", "file.out") submit(job=file, gargs=gargs, sargs=sargs)
That's all so far.
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