View source: R/AncestralNiche.R
AncestralNiche | R Documentation |
AncestralNiche(trees, best.tree, predictors.values, outgroup = F, nodes,
trees.sample = 100, trees.burnin = 20, do.lambda = T, do.models = F)
trees |
object of class "multiPhylo". |
best.tree |
object of class "phylo". |
predictors.values |
a named numeric vector of predictor values obtained
by |
outgroup |
vector of phylogenetic tips for outgroup. Not necessary. |
nodes |
internal nodes to estimate states (combined characters or numbers). |
trees.sample |
trees sample fraction (how many trees to analyze). |
trees.burnin |
trees burn-in percentage (how many trees to drop before sampling a fraction). |
do.lambda |
a flag whether to estimate phylogenetic sygnal of predictors on trees. |
do.models |
a flag whether to estimate best fitting evolutionary model for obtaining ancestral values for predictors. |
object of class "AncestalNiche"
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