AncestralNiche: Predict ancestral niche

In dissipative/recline: Reconstruction of Climatic Niche by phylogenetic and geographic data

Predict ancestral niche

Usage

AncestralNiche(trees, best.tree, predictors.values, outgroup = F, nodes,
  trees.sample = 100, trees.burnin = 20, do.lambda = T, do.models = F)

Arguments

trees	object of class "multiPhylo".
best.tree	object of class "phylo".
predictors.values	a named numeric vector of predictor values obtained by SelectPredVals.
outgroup	vector of phylogenetic tips for outgroup. Not necessary.
nodes	internal nodes to estimate states (combined characters or numbers).
trees.sample	trees sample fraction (how many trees to analyze).
trees.burnin	trees burn-in percentage (how many trees to drop before sampling a fraction).
do.lambda	a flag whether to estimate phylogenetic sygnal of predictors on trees.
do.models	a flag whether to estimate best fitting evolutionary model for obtaining ancestral values for predictors.

Value

object of class "AncestalNiche"

dissipative/recline documentation built on March 22, 2023, 8:57 p.m.