| bcpp | The Botswana Combination Prevention Project |
| gendata_crt | Generate data from GLMM |
| getInits | Get initial values for CI search |
| permci | Randomization-Based CI for regression |
| permci_glm | Randomization-Based CI for regression |
| permci_survreg_SEQ | SEQ version of permci_survreg (for debugging) |
| permtest | Randomization test |
| permtest_glm | Randomization test for regression |
| permute | Permute randomized treatment assignments |
| plot.permci | Plot randomization confidence interval |
| plot.permtest | Plot randomization distribution |
| pneumovac | Pneumococcal Conjugate Vaccine Trial |
| update_rm | Perform one update using Robbins-Monro search process |
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