tests/testSTRINGDB/README.md
In dkainer/RWRtoolkit: Random Walk with Restart Tool Suite
Toy network from STRING-DB
- Go to .
- Search for protein 'hexokinase' in organism 'homo sapiens'.
- Settings > minimum required interaction score > highest confidence (0.900)
- Click
+ More button once (or twice ... don't recall for sure).
- Exports > ... as simple tabular text output > download
- Open the file
string_interactions.tsv and separate the table into
'layers' according by filtering each layer column (numerics). If the
edge in that later has a score >0, keep the layer in that edge. Save
these layers to separate files.
- Make an
Rdata file using RWR_make_multiplex.R and flist.tsv.
dkainer/RWRtoolkit documentation built on Jan. 11, 2025, 3:26 a.m.
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Toy network from STRING-DB
- Go to .
- Search for protein 'hexokinase' in organism 'homo sapiens'.
- Settings > minimum required interaction score > highest confidence (0.900)
- Click
+ Morebutton once (or twice ... don't recall for sure). - Exports > ... as simple tabular text output > download
- Open the file
string_interactions.tsvand separate the table into 'layers' according by filtering each layer column (numerics). If the edge in that later has a score >0, keep the layer in that edge. Save these layers to separate files. - Make an
Rdatafile usingRWR_make_multiplex.Randflist.tsv.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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